Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0447 ATGGAAGTAGCCAAGAAGTCTCCGACAAGCTTCCTCCTCAAGACCCTCATCACCTTCTCAGAAATCGAGAAGCAACTTCAGGCTTCAGAATCAGCCAACCTTTTATTACCTGACCCATCGAACTTCCAGGATTTCTTGCCTCTGATGGCCCACAAGTTGGGGGGTGAGGGACTGATGAGTGAGCTCTGCAATGGCTTCAATCTGCTGATGGACAGCAGTAAGGGCGTCATCACTTTTGAGAGTCTGAAAAGGAACTCTGCTCTTCTGGGGTTGGAGGGCTTGTCCGATGATGATCTGTGGAGCATGCTGAGGGAAGGGGATTTTGATGGTGATGGGGCCCTGAATCAGATGGAGTTTTGTGTGCTCATGTTCAGATTAAGCCCTGAGTTGATGGAGGAGTCTGAGTTTTGGCTGGAAGAAGCCCTTCAACAGGAGCTCAAGAATCATCATTGA 453 0.4923 MEVAKKSPTSFLLKTLITFSEIEKQLQASESANLLLPDPSNFQDFLPLMAHKLGGEGLMSELCNGFNLLMDSSKGVITFESLKRNSALLGLEGLSDDDLWSMLREGDFDGDGALNQMEFCVLMFRLSPELMEESEFWLEEALQQELKNHH* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0447 150 Gene3D - 40 150 - -
Vvi19g0447 150 ProSiteProfiles EF-hand calcium-binding domain profile. 94 129 IPR002048 GO:0005509
Vvi19g0447 150 Pfam EF-hand domain pair 73 125 IPR002048 GO:0005509
Vvi19g0447 150 PANTHER CALCIUM-BINDING PROTEIN KIC 40 149 IPR044205 GO:0005509
Vvi19g0447 150 SUPERFAMILY EF-hand 40 123 IPR011992 -
Vvi19g0447 150 ProSitePatterns EF-hand calcium-binding domain. 107 119 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0447 Vvi-Chr19 4955380 4955973 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0447 42 149 EF-hand Containing Proteins AT5G54490 66.972 6.34e-48 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0447 K24345 - vvi:100267424 221.09