Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0437 ATGATGTACATATCCTACTCGAACATTTGTGCGAATCTGGTGAGGAACTGCCTCAAGGAGCCATTCAAATCCGAAGCCCTCACTCGCGAGAAGGTATCCAAGAAAAAAGAAGAAGATGATGAAGAATTAGAGACCCTCTTACGAAGATAG 150 0.4333 MMYISYSNICANLVRNCLKEPFKSEALTREKVSKKKEEDDEELETLLRR* 50
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0437 49 Gene3D ATP synthase, F1 complex, epsilon subunit superfamily, mitochondrial 1 38 IPR036742 GO:0000275|GO:0015986|GO:0046933
Vvi19g0437 49 Coils Coil 29 49 - -
Vvi19g0437 49 MobiDBLite consensus disorder prediction 29 49 - -
Vvi19g0437 49 Pfam Mitochondrial ATP synthase epsilon chain 3 33 IPR006721 GO:0000275|GO:0015986|GO:0046933
Vvi19g0437 49 PANTHER ATP SYNTHASE EPSILON CHAIN, MITOCHONDRIAL 1 34 IPR006721 GO:0000275|GO:0015986|GO:0046933
Vvi19g0437 49 SUPERFAMILY Epsilon subunit of mitochondrial F1F0-ATP synthase 3 35 IPR036742 GO:0000275|GO:0015986|GO:0046933
Vvi19g0437 49 CDD F1-ATPase_epsilon 1 32 IPR006721 GO:0000275|GO:0015986|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0437 Vvi-Chr19 4833792 4836538 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0437 K02135 - vvi:100248446 60.077