Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0435 ATGGATGCTCTTGCAACAGTTGTGTTCATCTTCTCCTATGTATTCTCCCTCTTAAGAATCTCCACTGCAGTAGACACCATAAATGTAAATCAACACATTAGAGATGGCGAGACCATCACTTCAGCGGGTGGGACCTTTCAATTGGGTTTCTTCAGTCCAGGTGATTCCAAGAATCGATACTTGGGGATATGGTACAAGAAAGTGGCTCCTCAGACGGTGGTATGGGTTGCCAATAGAGAAAGTCCACTAACTGATTCATCAGGTGTTTTAAAGGTCACTCAGCAGGGAACTCTTGTTGTGGTCAGCGGTACTAATGGAATTCTTTGGAATTCTAATTCATCACGTTCTGCGCAGGATCCAAACGCTCAGCTTTTGGAATCTGGAAATCTTGTTATGAGAAATGGCAATGATAGTGACCCGGAAAACTTCCTATGGCAGAGTTTTGATTATCCATGCGATACTCTTCTACCAGGCATGAAGTTTGGATGGAACAGAGTAACAGGCCTGGATCGGTACCTGTCATCGTGGAAGAGTGCGGATGACCCTTCTAAAGGTAATTTTACTTATGGGATTGATCTAAGTGGATTTCCACAACCATTTTTGAGGAATGGTTTAACTGTAAAGTTTCGTGCTGGACCATGGAATGGTGTTCGATTTGGTGGAATACCACAATTAACAAACAACTCACTTTTTACATTTGATTATGTTTCTAATGAAAAGGAGATATATTTTATTTATTATCTTGTTAACAGCTCTGTTTTTGTGAGGCGTGTGTTAACTCCTGATGGTTATTCACGAAGGTTCACATGGACTGATAAAAAAAATGAATGGACTCTTTACTCAACTGCACAGAGGGATGACTGTGACAATTATGCAATATGTGGAGTATATGGAATCTGTAAGATTGATGAATCTCCAAAATGTGAGTGTATGAAGGGATTTAGGCCAAAGTTCCAAAGCAATTGGGACATGGCAGACTGGTCAAAGGGATGCGTTCGAAGTACTCCGCTGGATTGTCAAAAGGGTGATGGATTTGTAAAGTACTCTGGTGTGAAACTGCCAGACACGCGGAACTCCTGGTTTGATGAAAGCATGAACCTTAAGGAATGTGCTTCCTTGTGCTTGAGGAACTGCTCTTGCACTGCTTATGCAAATTCAGATATCAGAGGAGGAGGAAGTGGATGCTTGCTCTGGTTTGATGACTTGATTGACATCAGAGACTTCACTCAAAATGGGCAAGAGTTTTATGCAAGGATGGCTGCATCAGAATCAGAAGCTTCTTCATGCATAAATAGTAGCTCCAAGAAGAAGAAAAAGCAGGTGATTGTCATCTCTATATCAATTACAGGAATAGTTTTTTTAAGTCTCATCCTGATCTTGTATGTGCTCAAGAAGAGGAAGAAGCAGCTAAAGAAAAAAGGTGAGTAA 1428 0.4104 MDALATVVFIFSYVFSLLRISTAVDTINVNQHIRDGETITSAGGTFQLGFFSPGDSKNRYLGIWYKKVAPQTVVWVANRESPLTDSSGVLKVTQQGTLVVVSGTNGILWNSNSSRSAQDPNAQLLESGNLVMRNGNDSDPENFLWQSFDYPCDTLLPGMKFGWNRVTGLDRYLSSWKSADDPSKGNFTYGIDLSGFPQPFLRNGLTVKFRAGPWNGVRFGGIPQLTNNSLFTFDYVSNEKEIYFIYYLVNSSVFVRRVLTPDGYSRRFTWTDKKNEWTLYSTAQRDDCDNYAICGVYGICKIDESPKCECMKGFRPKFQSNWDMADWSKGCVRSTPLDCQKGDGFVKYSGVKLPDTRNSWFDESMNLKECASLCLRNCSCTAYANSDIRGGGSGCLLWFDDLIDIRDFTQNGQEFYARMAASESEASSCINSSSKKKKKQVIVISISITGIVFLSLILILYVLKKRKKQLKKKGE* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0435 475 PIRSF SLG 3 434 IPR035446 -
Vvi19g0435 475 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 338 419 - -
Vvi19g0435 475 Gene3D - 19 148 IPR036426 -
Vvi19g0435 475 ProSiteProfiles PAN/Apple domain profile. 339 420 IPR003609 -
Vvi19g0435 475 Pfam PAN-like domain 339 405 IPR003609 -
Vvi19g0435 475 SMART blect_4 30 151 IPR001480 -
Vvi19g0435 475 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Vvi19g0435 475 Gene3D Hepatocyte Growth Factor 336 420 - -
Vvi19g0435 475 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 148 - -
Vvi19g0435 475 Pfam D-mannose binding lectin 72 177 IPR001480 -
Vvi19g0435 475 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 465 - -
Vvi19g0435 475 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 182 IPR036426 -
Vvi19g0435 475 SMART ntp_6 340 419 IPR003609 -
Vvi19g0435 475 CDD B_lectin 30 151 IPR001480 -
Vvi19g0435 475 Pfam S-locus glycoprotein domain 209 318 IPR000858 GO:0048544
Vvi19g0435 475 CDD PAN_AP_plant 335 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0435 Vvi-Chr19 4799621 4801550 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0435 - - vvi:100267473 915.605