Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0430 ATGAGGCTTGTGTTAACTCCTGATGGTTATTCACGAAGATTCACATGGACTGATCAAAAAAATGAATGGACTCTTTACTCAACCACACAGAAGGATGACTGTGACAATTATGCAATATGTGGAGTATATGGAATCTGTAAGATTGATGAATCTCCAAAATGTGAGTGTATGAAGGGATTTAGGCCAAAGTTCCAAAGCAATTGGGACATGGCAGACTGGTCAAAGGGATGCGTTCGAAGTACTCCACTGGATTGTCAAAAGGGTGATGGATTTGTAAAGTACTCTGGTGTGAAACTGCCAGACACGCGGAACTCCTGGTTTGATGAAAGCATGAACCTTAAGGAATGTGCTTCCCTGTGCTTGAGGAACTGCTCTTGCACTGCTTATGCAAATTCAGATATCAGAGGAGGAGGAAGTGGATGCTTGCTCTGGTTTGATGACTTGATTGACATCAGAGACTTCACTCAAAATGGGCAAGAGTTTTATGCAAGGATGGCTGCATCAGAATCAGGATACATGGAACACAATATTGAGGGAGATGAAACCAATGAAGGTCAGGAGCACCTAGAGATACCATTATTTGACTTGGATACATTATTGAATGCCACCAATAACTTTTCTAGTGACAATAAGCTTGGAGAGGGTGGTTTTGGGCCTGTCTACAAGATCAAATGCGAAGCGTGGTACTAG 690 0.4232 MRLVLTPDGYSRRFTWTDQKNEWTLYSTTQKDDCDNYAICGVYGICKIDESPKCECMKGFRPKFQSNWDMADWSKGCVRSTPLDCQKGDGFVKYSGVKLPDTRNSWFDESMNLKECASLCLRNCSCTAYANSDIRGGGSGCLLWFDDLIDIRDFTQNGQEFYARMAASESGYMEHNIEGDETNEGQEHLEIPLFDLDTLLNATNNFSSDNKLGEGGFGPVYKIKCEAWY* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0430 229 SUPERFAMILY Protein kinase-like (PK-like) 187 225 IPR011009 -
Vvi19g0430 229 Pfam S-locus glycoprotein domain 2 64 IPR000858 GO:0048544
Vvi19g0430 229 CDD PAN_AP_plant 81 166 - -
Vvi19g0430 229 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 2 222 - -
Vvi19g0430 229 ProSiteProfiles PAN/Apple domain profile. 85 166 IPR003609 -
Vvi19g0430 229 Gene3D Hepatocyte Growth Factor 82 166 - -
Vvi19g0430 229 Gene3D Phosphorylase Kinase; domain 1 167 227 - -
Vvi19g0430 229 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 84 165 - -
Vvi19g0430 229 Pfam PAN-like domain 85 151 IPR003609 -
Vvi19g0430 229 SMART ntp_6 86 165 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0430 Vvi-Chr19 4723091 4725550 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0430 175 222 Receptor kinase-like Gene Family AT4G04500 54.000 8.66e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0430 - - vvi:100260657 459.529