Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0416 ATGGCTACCTTTACAACACTTGTAGTTTTCTTCTATGCGATCTTCATCTTAAGGGTCTCCAATGCAGGAGACACCATAACTGTTGATCTAGTAATTAGAGATGGGGAGACCATTACTTCTGTTGGTGGGAGCTTCGAACTGGGTTTTTTCAGCCCAGTTGATTCCAATAATCGATATGTGGGGATATGGTACAAGAAGGTGTCTACTAGAACTGTGGTATGGGTTGCCAACAGAGAATTTCCTCTCACTGACTCATCAGGAGTCCTGAAGGTCACGGACCAGGGAACTCTTGTCGTTCTCAATGGTACTAATGGCATCATTTGGTCTTCTAATTCATCGCAACCTGCAATAAATCCAAATGTGCAGCTTTTGGAGTCTGGAAATCTTGTTGTGAAGAATGGTAATGATAGTGACCCGGAAAAGTTTCTATGGCAGAGTTTTGATTATCCTTGTGATACTGTTCTACCAGGCATGAAGTTTGGAAGGAACACTGTGACAGGCTTAGATCGGTACTTATCTTCATGGAAGAGCACTGATGACCCTTCTAAAGGTAATTTTACATACCGGCTTGATCCTAGTGGATTTCCACAACTGATTCTGAGGAGTGGCTCAGCTGTGACTTTTTGCTCTGGTCCATGGAATGGCCTTCGATTTAGTGGGTGTCCTGAAATAAGGTCAAATCCAGTTTATAAATATTCCTTTGTTTTAAATGAAAAGGAGATTTATTATACTTATGATCTTCTTAACAACTCTGTTATTACGAGGCTGGTGTTAAGTCCAAATGGATACGTTCAGCGTTTCACATGGATTGATCGAACACGTGGGTGGATCCTTTACTCGTCTGCACATAAGGATGACTGTGACAGTTATGCATTGTGTGGTGCATATGGCAGCTGCAACATTAACCATTCTCCAAAATGTACATGTATGAAAGGATTTGTTCCAAAGTTCCCAAATGAATGGAACATGGTGGATTGGTCAAATGGATGTGTTCGGAGCACTCCACTGGATTGTCACAAGGGTGAGGGGTTTGTAAAGTACTCTGGTGTGAAACTGCCAGACACGCAATACTCCTGGTTTAATGAAAACATGAGTCTCAAGGAGTGTGCCTCTATATGCTTGGGGAACTGCTCTTGCACTGCCTATGCAAATTCAGATATCAGGAACGGAGGAAGTGGATGCTTGCTCTGGTTTGGTGATTTGATTGATATCAGAGAATTTGCTGAAAATGGACAAGAGTTGTATGTGAGGATGGCTGCATCAGAATTAGATGCCTTTTCTAGCTCAAATAGCAGCTCTGAGAAGAGACGAAAGCAGGTCATCATCAGCTCTGTATCAATTTTGGGAGTGCTTTTCCTAGTTGTAATCCTGACCTTGTATGTTGTGAAGAAGAAGAAGAAGCTAAAGAGAAACGGTAAACATGAGCATCTTGAATTACCACTATTTGACTTGGCTGCATTGTTGAGTGCTACAAATAACTTTTCAAGTGACAATAAGCTTGGAGAGGGTGGTTTTGGACCTGTCTACAAGGTAAGACTATCCTCTTTTTTCTGGGCTGAGTTTAATCTTCAAGTTAATAACACATGA 1587 0.4159 MATFTTLVVFFYAIFILRVSNAGDTITVDLVIRDGETITSVGGSFELGFFSPVDSNNRYVGIWYKKVSTRTVVWVANREFPLTDSSGVLKVTDQGTLVVLNGTNGIIWSSNSSQPAINPNVQLLESGNLVVKNGNDSDPEKFLWQSFDYPCDTVLPGMKFGRNTVTGLDRYLSSWKSTDDPSKGNFTYRLDPSGFPQLILRSGSAVTFCSGPWNGLRFSGCPEIRSNPVYKYSFVLNEKEIYYTYDLLNNSVITRLVLSPNGYVQRFTWIDRTRGWILYSSAHKDDCDSYALCGAYGSCNINHSPKCTCMKGFVPKFPNEWNMVDWSNGCVRSTPLDCHKGEGFVKYSGVKLPDTQYSWFNENMSLKECASICLGNCSCTAYANSDIRNGGSGCLLWFGDLIDIREFAENGQELYVRMAASELDAFSSSNSSSEKRRKQVIISSVSILGVLFLVVILTLYVVKKKKKLKRNGKHEHLELPLFDLAALLSATNNFSSDNKLGEGGFGPVYKVRLSSFFWAEFNLQVNNT* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0416 528 SMART blect_4 29 150 IPR001480 -
Vvi19g0416 528 SMART ntp_6 339 418 IPR003609 -
Vvi19g0416 528 Pfam D-mannose binding lectin 71 176 IPR001480 -
Vvi19g0416 528 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 18 147 - -
Vvi19g0416 528 SUPERFAMILY Protein kinase-like (PK-like) 475 514 IPR011009 -
Vvi19g0416 528 Pfam PAN-like domain 338 404 IPR003609 -
Vvi19g0416 528 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 337 418 - -
Vvi19g0416 528 Gene3D Phosphorylase Kinase; domain 1 457 517 - -
Vvi19g0416 528 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 181 IPR036426 -
Vvi19g0416 528 CDD B_lectin 29 150 IPR001480 -
Vvi19g0416 528 Gene3D - 17 147 IPR036426 -
Vvi19g0416 528 ProSiteProfiles PAN/Apple domain profile. 338 419 IPR003609 -
Vvi19g0416 528 CDD PAN_AP_plant 334 419 - -
Vvi19g0416 528 Pfam S-locus glycoprotein domain 209 317 IPR000858 GO:0048544
Vvi19g0416 528 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
Vvi19g0416 528 CDD EGF_CA 285 316 - -
Vvi19g0416 528 Gene3D Hepatocyte Growth Factor 335 418 - -
Vvi19g0416 528 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0416 Vvi-Chr19 4580815 4583278 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0416 440 510 Receptor kinase-like Gene Family AT1G53430 40.278 1.97e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0416 - - vvi:100252078 1046.19