Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0405 ATGGAGGGGCTTCCTTTCTTCACCTTCTTTTGCTCTTTGATTTCTTCCTCAATCTTCTTGAAATTTTGTGTCGCATCAGATACCATAACTCCAACCCAGTCCATGGTTGATGGTGAGACTTTAGTTTCATCAGGCCAAAGGTTTGAACTAGGCTTCTTCTCGCCTGAAAACTCCAAGAACAGGTACCTAGGAATATGGTACAAGAGTGCCCCACATACAGTTGTGTGGGTGGCAAACAGAAACAACCCCATCACAGATTCACATGGAGTTTTAACTATCAGCATAAACGGAACACTTGTTCTTCTCAACCAGGAAGGGAGCGTGGTCTGGTATTCGGGTTTATCAGGAATAGCAGAAAATCCAGTTGCACAGCTCCTAGACTCTGGAAACTTTGTTCTGAGAGATAGTCTTAGCAAGTGTTCTCAAAGCTATCTCTGGCAGAGCTTTGATTACCCATCTGACACACTGTTAGCTGGCATGAAGCTAGGCAGGACCTCCAACCCTGATCTAGAACGATATTTGATATCATGGAAAAGCCCTGATGAACCATCCAATGGAGACTTCACTTGGAGATTAGATACTCCCAGGCTGCCTCAACTGGTTGTTGCAACGGGATCAACCAAAAAGTACCGCACTGGGCCATGGAATGGAATTCGATTTAGTGGTATTCCGGTGTTTCCCAACGAGCAGCACTATTCACACATAATGATCTTTGATAAGGAGAATGCATATTACATGCTTTCATTTGACAACTACTCTGCTAATACGAGAACAACCATCAATCACTCAGGCTTCATCCAATGGCTTCGATTGGATGAACACAATGCGGAGTGGGTTCCTTTGTACATATTACCATATGACCCATGTGACAATTATGGACAGCGTGGTGCTAATAGCATTTGCAGGAATTCCAGAACACCAATCTGA 927 0.4391 MEGLPFFTFFCSLISSSIFLKFCVASDTITPTQSMVDGETLVSSGQRFELGFFSPENSKNRYLGIWYKSAPHTVVWVANRNNPITDSHGVLTISINGTLVLLNQEGSVVWYSGLSGIAENPVAQLLDSGNFVLRDSLSKCSQSYLWQSFDYPSDTLLAGMKLGRTSNPDLERYLISWKSPDEPSNGDFTWRLDTPRLPQLVVATGSTKKYRTGPWNGIRFSGIPVFPNEQHYSHIMIFDKENAYYMLSFDNYSANTRTTINHSGFIQWLRLDEHNAEWVPLYILPYDPCDNYGQRGANSICRNSRTPI* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0405 308 Gene3D - 22 149 IPR036426 -
Vvi19g0405 308 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 149 - -
Vvi19g0405 308 SMART blect_4 32 152 IPR001480 -
Vvi19g0405 308 Pfam S-locus glycoprotein domain 210 307 IPR000858 GO:0048544
Vvi19g0405 308 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 302 - -
Vvi19g0405 308 ProSiteProfiles Bulb-type lectin domain profile. 26 146 IPR001480 -
Vvi19g0405 308 Pfam D-mannose binding lectin 73 178 IPR001480 -
Vvi19g0405 308 SUPERFAMILY alpha-D-mannose-specific plant lectins 63 217 IPR036426 -
Vvi19g0405 308 CDD B_lectin 32 152 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0405 Vvi-Chr19 4484144 4485070 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0405 - - vri:117909116 577.015