Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0399 ATGGAGACCCATCTTTTCTTCGCCATCTTTTGTGCTTGGATTTGTCTCTCAGTTCCCTTGGAGTTCTGTATTGCAGCTGATTCCATAAGGATGGACCAATCCATAAGCCATGGTGAGACTTTAGTTTCCTCAGGCCAAAGTTTTGAACTAGGCTTCTTCTCTCCTGGAAGCTCCAAAAACAGGTACTTGGGAATATGGTACAAGAATACACCCCAGACAGTTGTATGGGTTGCAAACAGAAACAACCCAATTGCAGATTCTTACGGAGTTTTAACCATCATCAACAATGGCGCACTTGTTCTTCTCAACCAGTCAAAGAGTGTAATCTGGTCTCCCAATTTGTCAAGGGTACCTGAAAATCCAGTTGCACGGCTCCTAGAGACTGGAAATCTTGTTCTCAGGGACAGTAGTAATGAAAGTTCTGAAAGCTATATATGGCAGAGCTTTGATGATCCATCAGACACAATGTTGCCACGCATGAAGGTGGGATGGAACTTAAAGACTGGTCTACAACAAAAATTGACATCATGGAGAAGTGCTGATGACCCATCCCTTGGAGACTTCTCTTACAGAATTGATATTAATGTGCTGCCTTACGTGGTTCTTGGTGTGGGATCAAGCAAAAAAGTCCGTTCCGGGCCGTGGAATGGACTTGAATTCAATGGTGTTCTTGTGTTGGACTACTTGGTTTACAAAGCAGTTTTTGTTAACAACGACGATGAGTTCGGTCCAACGAAAGAACGATGA 747 0.4337 METHLFFAIFCAWICLSVPLEFCIAADSIRMDQSISHGETLVSSGQSFELGFFSPGSSKNRYLGIWYKNTPQTVVWVANRNNPIADSYGVLTIINNGALVLLNQSKSVIWSPNLSRVPENPVARLLETGNLVLRDSSNESSESYIWQSFDDPSDTMLPRMKVGWNLKTGLQQKLTSWRSADDPSLGDFSYRIDINVLPYVVLGVGSSKKVRSGPWNGLEFNGVLVLDYLVYKAVFVNNDDEFGPTKER* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0399 248 ProSiteProfiles Bulb-type lectin domain profile. 26 146 IPR001480 -
Vvi19g0399 248 Gene3D - 22 149 IPR036426 -
Vvi19g0399 248 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 149 - -
Vvi19g0399 248 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 227 - -
Vvi19g0399 248 SMART blect_4 32 152 IPR001480 -
Vvi19g0399 248 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 183 IPR036426 -
Vvi19g0399 248 CDD B_lectin 32 152 IPR001480 -
Vvi19g0399 248 Pfam D-mannose binding lectin 73 178 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0399 Vvi-Chr19 4411937 4415159 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0399 - - vvi:100262419 493.812