Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0395 ATGGACGAATCCATAAGCCATGGTGAGACTTTAGTTTCCTCAGGCCAAAGTTTTGAACTAGGCTTCTTCTCTTCTAGAAGCTCCAAAAACAGGTACTTGGGAATATGGTACAAGAATACACCCCAAACAGTTGTATGGGTTGCAAACAGAAACAACCCAATTGTAGATTCTTACGGAGTTTTAACCATCATCAACAATGGCACACTTGTTCTTCTCAACCAGTCAAAGAGTGTAATCTGGTCTCCCAATTTGTCAAGGGTACTTGAAAATCCAGTTGCACGGCTCCTAGAGACTGGAAATCTTGTTCTCAGGGATAATAGTAATGAAAGTTCTGAAAGCTATATATGGCAGAACTTTGATGATCCATCAGACACAATGTTGCCAGGCATGAAGGTGGGATGGAACTTAAAGACTGGTCTACAACAAAAATTGACATCAGGGAGAAGTGCTGATGACCCATCCATTGGAGACTTCTCTTACAGAATTGATATTAATGTGCTGCCTTACATGGTTCTTGGTGTGGGATCAAGCAAAAAAGTCCGTTTCGGGCCGTGGAATGGACTTGAATTCAATGGTGTTCTTGTGTTGGACTACTTGGTTTACAAAGAAGTTTTTGTTAACAACGACGATGAGGTATATACCCTCTGTGAGTCTAACAACAATAAGATCATTTCAAGACTAACATTGAACCATTTAGGTTTCACACCAAATTCACAAAAAAGGGACATGTTTAATACATCAAGCGGATGCACACGAAGAAGGCATTTGGATTGCCAAAGTGAAGAGGGATTTGTAAAGGTTACAGGGGTGAAATTGCCCGACTTGATAGATTCTCATGTGATTAATAGTGTGAGCCTTAGGGAGTGTGAGGTGTTGTGCTTGAGCGACTGTTCTTGTACAACATATGCCTAA 912 0.4079 MDESISHGETLVSSGQSFELGFFSSRSSKNRYLGIWYKNTPQTVVWVANRNNPIVDSYGVLTIINNGTLVLLNQSKSVIWSPNLSRVLENPVARLLETGNLVLRDNSNESSESYIWQNFDDPSDTMLPGMKVGWNLKTGLQQKLTSGRSADDPSIGDFSYRIDINVLPYMVLGVGSSKKVRFGPWNGLEFNGVLVLDYLVYKEVFVNNDDEVYTLCESNNNKIISRLTLNHLGFTPNSQKRDMFNTSSGCTRRRHLDCQSEEGFVKVTGVKLPDLIDSHVINSVSLRECEVLCLSDCSCTTYA* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0395 303 Pfam PAN-like domain 258 303 IPR003609 -
Vvi19g0395 303 ProSiteProfiles PAN/Apple domain profile. 258 303 IPR003609 -
Vvi19g0395 303 ProSiteProfiles Bulb-type lectin domain profile. 1 116 IPR001480 -
Vvi19g0395 303 Pfam D-mannose binding lectin 43 147 IPR001480 -
Vvi19g0395 303 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 119 - -
Vvi19g0395 303 SMART blect_4 2 122 IPR001480 -
Vvi19g0395 303 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 233 303 - -
Vvi19g0395 303 CDD PAN_AP_plant 255 303 - -
Vvi19g0395 303 CDD B_lectin 2 122 IPR001480 -
Vvi19g0395 303 Gene3D - 1 119 IPR036426 -
Vvi19g0395 303 SUPERFAMILY alpha-D-mannose-specific plant lectins 44 152 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0395 Vvi-Chr19 4346900 4347961 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0395 - - vvi:100262419 511.146