Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0368 ATGGCTGCCTCCACTCTCTCCCCTGCAACCTCTTCTCAGGTCTGTCTGTGCTCTATCAGGAATGGGGTGTTGTCACCATCCCATGCTCTGCTGCCCAAGCTCACAAGGACGAGTCCATTTGTGGGGAAGGGAAAGGGCTTGAAGATCAAGTGTCAGGCCACCAGCATTCCGGCCGATCGAGTTCCTGACATGGGCAAGAGGAAGCTCATGAACTTGCTTTTGTTGGGTGCTATTTCCCTCCCCTCAGCTGGCATGTTGATTCCTTATGCCACCTTCTTTGCACCTCCTGGAACAGGATCTGCTGGAGGTGGTATTGTGGCCAAGGATGCACTTGGAAATGATGTTATTGCAGATGAATGGCTTAAGACTCATGGCCCTGGTGACAGAACCCTAACACAAGGGTTGAAGGGAGACCCCACCTACCTTGTTGTGGAGAATGACAAAACCCTTGCCACATATGGTATTAATGCAGTCTGCACCCATCTTGGGTGTGTTGTGCCGTGGAATGCAGCTGAGAACAAGTTCATCTGCCCATGCCATGGATCTCAGTACAACAACCAAGGCAGGGTTGTCAGAGGACCTGCTCCTCTGTCGTTGGCGCTGGCACATGCAGATATTGATGATGGGAAGGTATTGTTTGTTCCTTGGGTTGAGACAGATTTCAGAACAGGTGAAGATCCATGGTGGGCCTAA 693 0.5123 MAASTLSPATSSQVCLCSIRNGVLSPSHALLPKLTRTSPFVGKGKGLKIKCQATSIPADRVPDMGKRKLMNLLLLGAISLPSAGMLIPYATFFAPPGTGSAGGGIVAKDALGNDVIADEWLKTHGPGDRTLTQGLKGDPTYLVVENDKTLATYGINAVCTHLGCVVPWNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADIDDGKVLFVPWVETDFRTGEDPWWA* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0368 230 Gene3D Single helix bin 51 95 - -
Vvi19g0368 230 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 50 219 IPR014349 GO:0051537
Vvi19g0368 230 Pfam Rieske [2Fe-2S] domain 135 199 IPR017941 GO:0051537
Vvi19g0368 230 FunFam Cytochrome b6-f complex iron-sulfur subunit 52 95 - -
Vvi19g0368 230 SUPERFAMILY ISP domain 59 229 IPR036922 GO:0051537
Vvi19g0368 230 PRINTS Rieske 2Fe-2S subunit signature 187 199 IPR005805 GO:0016020|GO:0051537
Vvi19g0368 230 PRINTS Rieske 2Fe-2S subunit signature 175 187 IPR005805 GO:0016020|GO:0051537
Vvi19g0368 230 PRINTS Rieske 2Fe-2S subunit signature 154 165 IPR005805 GO:0016020|GO:0051537
Vvi19g0368 230 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 117 213 IPR017941 GO:0051537
Vvi19g0368 230 Gene3D - 96 230 IPR036922 GO:0051537
Vvi19g0368 230 FunFam Cytochrome b6-f complex iron-sulfur subunit 96 230 - -
Vvi19g0368 230 Hamap Cytochrome b6-f complex iron-sulfur subunit [petC]. 53 230 IPR023960 GO:0016020|GO:0045158|GO:0051537
Vvi19g0368 230 CDD Rieske_cytochrome_b6f 105 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0368 Vvi-Chr19 3943051 3944840 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0368 K02636 - vvi:100258879 468.774