Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0364 ATGGATGCCACAACGATGAATCCAGAAGGCCGGGCATTTTCTATCAAACTATGGCCCCCTAGCCAGACCACTCGGCTACTGCTTGTGGAACGAATGGCAAACAATCTTTCCACTCCATCCATTTTCACTCGAGAGTATGGTAGTCTCAGCAAAGAGGAAGTAAGGGAGAATGCCAAACAGATCGAAGAGCCAGATGGTGATGGAGGTTCTGCAGTGCAGCTTTATGCCAAAGAATGCAGTAAGCTAATCCTCGAAGTTCTTAAAAGAGGCCCTATAACCAAGGTGGATGGAGCGAAGCCAACATCTAAGACATTTAATGAAGCCTGTGAAACTGTTTTTGATATATCTAAAGGCCAAAGAGCATTTGTTGAGGCAGAGGAAGCTGAGGAGCTTTTGAGGCCATTAAAAGAGCCAGGAAATTCTTATACTAAGATATGTTTCAGCAATCGAAGCTTTGGTTTAGGCGCAGCCCGTGTTGCAGAGCCTATCTTGGCTTCTCTCAAGGATCAGTTAAAGGAAGTGGACCTGTCAGATTTTATTGCTGGGAGATCGGAAGGGGAAGCTCTTGAAGTCATGGCTATATTTTCTGAGGCTCTTGAAGGTTGTGTTTTGAAGTCTCTGGACCTCTCAAACAATGCTTTGGGTGAGAAGGGTGTTAGGGCGTTTGGGGCGCTCCTGAAATCACAAAGTAGCTTGGAGGAGCTCTATTTAATGAATGATGGGATCTCAGAGGAAGCTGCTCGAGCAGTTTGTGAGTTAATCCCTTCTACTGAGAAGCTTAGGGTCCTTCAATTTCATAATAATATGACAGGAGATGAAGGGGCACTTGCTATTTCTGAGGTAGTGAAGCAGTCTCCCATGTTAGAGGATTTTCGATGTTCCTCTACAAGGATAGGCTCCGACGGAGGAGTTGCCTTATCTGAAGCTCTTCAGACCTTTACCAATCTGAAGAATCTCGATCTGCGGGACAACATGTTTGGTGTAGAAGCTGGAGTTGCCCTTAGTAAAGCTCTTGCCAAGCATGCAGATCTTACCGAGGCTTACCTGAGCTACCTGAACTTGGAAGATGAGGGTGCAGTTGCTATAGCCAATGTTCTTAAGGAATCTGCTTCTGCACTGGAAGTCTTGGAGATGGCTGGAAATGATATAACAGCTGAAGCTGCTCCTGCTTTAGCTGCTTGTATAGCAGCAAAGCAGCTTATCACAAAGCTGAACTTGGCCGACACTGAACTGAGGGATGAAGGTGCTATCCAAATTAGCAAGGCATTGGAAGATGGCGATGCTCAATTGAAGGGAGTCGACTTGAGCTCCAATTTCATGAGAAGGGCTGGGGCTAGGTGCTTGACTCGCGCTGTGGTGCATAAGCCTGGGTTAAAATTGCTTAACATGAATGGAAATTTCATCTCTGATGAGGGCATTGATGAGGTGAAGAATATATTTAATGAATTTCCTAATGTTCTTGGATCCTTGGATGAGAATGACCCTGAAGGAGAAGATGATAACGAATCTGGAGAGGGTGAAGATGAAGGGGATGAATTAGAATCGAAATTGAAGAATCTCGAGGTCCATCAGGAAGACTAG 1581 0.4522 MDATTMNPEGRAFSIKLWPPSQTTRLLLVERMANNLSTPSIFTREYGSLSKEEVRENAKQIEEPDGDGGSAVQLYAKECSKLILEVLKRGPITKVDGAKPTSKTFNEACETVFDISKGQRAFVEAEEAEELLRPLKEPGNSYTKICFSNRSFGLGAARVAEPILASLKDQLKEVDLSDFIAGRSEGEALEVMAIFSEALEGCVLKSLDLSNNALGEKGVRAFGALLKSQSSLEELYLMNDGISEEAARAVCELIPSTEKLRVLQFHNNMTGDEGALAISEVVKQSPMLEDFRCSSTRIGSDGGVALSEALQTFTNLKNLDLRDNMFGVEAGVALSKALAKHADLTEAYLSYLNLEDEGAVAIANVLKESASALEVLEMAGNDITAEAAPALAACIAAKQLITKLNLADTELRDEGAIQISKALEDGDAQLKGVDLSSNFMRRAGARCLTRAVVHKPGLKLLNMNGNFISDEGIDEVKNIFNEFPNVLGSLDENDPEGEDDNESGEGEDEGDELESKLKNLEVHQED* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0364 526 Pfam WPP domain 14 94 IPR025265 -
Vvi19g0364 526 SUPERFAMILY RNI-like 123 500 - -
Vvi19g0364 526 MobiDBLite consensus disorder prediction 487 526 - -
Vvi19g0364 526 SMART LRR_RI_2 398 425 - -
Vvi19g0364 526 SMART LRR_RI_2 257 284 - -
Vvi19g0364 526 SMART LRR_RI_2 455 482 - -
Vvi19g0364 526 SMART LRR_RI_2 313 340 - -
Vvi19g0364 526 SMART LRR_RI_2 201 228 - -
Vvi19g0364 526 SMART LRR_RI_2 370 397 - -
Vvi19g0364 526 SMART LRR_RI_2 229 256 - -
Vvi19g0364 526 SMART LRR_RI_2 285 312 - -
Vvi19g0364 526 SMART LRR_RI_2 341 368 - -
Vvi19g0364 526 Pfam Leucine Rich repeat 204 222 IPR001611 GO:0005515
Vvi19g0364 526 Pfam Leucine Rich repeat 400 419 IPR001611 GO:0005515
Vvi19g0364 526 Gene3D WPP domain 14 97 IPR038214 -
Vvi19g0364 526 Gene3D Ribonuclease Inhibitor 116 400 IPR032675 -
Vvi19g0364 526 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 12 524 IPR045203 GO:0005096
Vvi19g0364 526 Gene3D Ribonuclease Inhibitor 401 508 IPR032675 -
Vvi19g0364 526 MobiDBLite consensus disorder prediction 511 526 - -
Vvi19g0364 526 MobiDBLite consensus disorder prediction 492 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0364 Vvi-Chr19 3894331 3895951 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0364 K14319 - vvi:100259658 918.687