Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0326 ATGGCCAATTACTTAGCCCATTTCCAAACCATCAAGAACTCCTGCGATCGCCTCGTCATTGCCGTTGAAGATGTAAGTGATTTGTGGCCTGCTGTGAAGAAGGGATTTGAAGAACGATTACCATTCAAAAGAGCTTGTTTGAATAACAAGACCCGAAATCCAGTTTTTGTAGAGAAATTGGCTGCTGAATTCATATTAACAACAGATCCAAGACTTCGTAGCCGGTTTCCGCAGGAACAATTACTATTTTGGTTCCGAGAACCATATGCAACAGTGGTACTTGTTTCCTGTGAGGATCTTGATGAGTTCAAGACCATTCTTAAACCACGCCTGAAATTAATTGTTCAGAATGATGAGCGAGAATGGTGTATTGTATTTGTGTCTAAAGCTCACCCAAATAATGACCAGGCCACTAAAATGGCAAAAAAAGTATATGCCAGGCTTGAAGTTGATTTCAGCTCTAAGAAGAGAGAAAGGTGCTGTAAGCTAGATATACATAGCCCCGAAGCAAATTTTTGGGAAGACTTGGAGTCCAAGATTATGGAGTCCATCAGGAATACATTGGATAGACGTGTGCAGTTTTATGAGGATGAGATTCGCAAGCTCAGTGAACAGCGCCTCATGCCAATTTGGAACTTCTGTAACTTTTTCATTCTAAAGGAAAGCTTGGCTTTTATGTTTGAGATGGCTCATCTTCATGAAGATTCATTGCGTGAATACGACGAATTAGAACTCTGCTACTTGGAAACAGTTAATGTAGCAGGGAAACAAAGGGACTTTGGGGGAATAGACCGTGGTGATGATCAGGCAGCACTGCTAAACCCTGGAAACAAGCTATTGACACAGATTGTCCAAGATGATTCATTTAGGGAATTTGAATTTAGACAATATCTCTTTGCCTGTCAATCCAAGCTATTGTTCAAGCTAAACCGTCCTTTTGAGGTTGCATCAAGGGGCTATCCATTTATAATCAGCTTCTCAAAGGCATTAGCACTTCATGAGAGGATGTTACCTTTTTGCATGCGTGAAGTTTGGGTAGTAACTGCTTGCTTGGCATTAATCAATGCTACTGCTTCTCATTATAATGATGGATTTGTGGCACCTGATATAGAAAAGGAGTTCTACCGCATTCAGGGCAACCTTTATTCACTATGCCGTGTTAAGTTCATGAGGCTTGCATACTTAATTGGATATGGAACTGAAATAGAAAGAAGTCCTGTCAACAGTGCTTCACTCAGCATGTTATCTTGGCCCATGCCCGCAGTTTGGCCTCCAGTTCCACCTGATGCCTCATCCATGGTGCTGGAGAAAGAAAAGACGATTCTTCAAGCGACTCCAAGAGTCAAGCATTTCGGCATTCAGAGGAAACCATTGCCTCTTGAACCTTCTATACTTTTGCGTGAAGCTAATCGGCGAAGGGCTTCTCTTTCTGCTGGCAATATGGTTGAAATGTTTGAGGGTCGTCCAATTTTTGTTGATGGATCAGATTCAGATGCATCTTTAAGGATGTCTCCATCATCAAAAGTACATGCAATCTCTATGACACGGACTAATTCTTCGCCAATAAATTTTGAAAGCTCAATTGATCGACCTATGAGACTTGCAGAAATTTATGTTGCTGCTGAGCATGCTTTGCAGAATACAATTTCTGATACTGATCTATGGAAATCTCTGTTATCTGTTGAGGAGTTTGAGAAAAAATATCTGGAGCTAACAAAAGGTGCTGCTGATAATTACCACCGTTCCTGGTGGAAAAGACATGGAGTTGTTCTTGATGGTGAAATTGCAGCTGTCTGTTATAGGCATGGAAACTTTGATCTAGCTGCAAAGTCATATGAGAAGGTCTGCGCCCTTTATGCAGGTGAAGGATGGCAAGATTTATTGGCTGAAGTCCTTCCCAAGTTAGCTGAGTGTCAGAAGATACTCAATGATCAAGCTGGCTATCTATCATCTTGTGTGAGGTTGCTGTCGCTAGATAAAGGCTTATTCTCAACCAAGGAACGTCAAGCTTTTCAGTCAGAGGTTGTTCGCCTTGCACACAGTGAAATGAAGCACCCTGTGCCCCTAGATGTATCCTCACTAATAACGTTTTCTGGCAATCCTGGGCCACCATTGGAGCTGTGTGATGGGGATCCTGGTACTCTATCTGTAACTGTTTGGAGTGGCTTTCCTGATGATATAACTCTAGAAGTGCTGAGTCTCACTTTGGCAGCTATATTTAATGTTGATGAAGGTGTTAAGGCATTAAGAAGCTCTGCTGCTCCTATACTAAAGCCTGGGAGGAATACCATCACCCTTGCTCTGCCCCCACAAAAACCAGGTTCCTATGTCCTAGGGGTTCTTACAGGACAGATTGGGCAATTGAGATTTAGGTCCCACAGCTTTTCTAAAGGTGGCCCTGCAGACAGTGATGATTTTATGAGTTATGAGAAGCCAGCAAGACCTATCTTAAAGGTTTCCAAACCGAGACCTCTGGTTGATCTTGCCGCTGCAATTTCATCTGCTTTGTTAATGAATGAGCCTCAGTGGGTTGGAATTATAGTAAGGCCTATTAACTACTCCCTCAAAGGTGCTGTCCTGTATATTGATACTGGTCCAGGTCTGAAGATAGAGGAATCACATCCCATTGAGATCGAGAGGCATTCTGATGTATCACAGAGTGCTACAGACATGGAAAGTTGTGATCAAGCTAGAAAAAAAGACTCTTCAGTTGTCATTGAAGAATTTAAGCAATTAACTCTCCAAAATGGTAGAATAGAGTTGCCTGACTGGGCTAGCAATATAACTTCTGTTATTTGGTTCCCGATCAGTGCTATCAGTGACAAGCTTGCGAGAGGAACATCTTCAGTCACTCCCCAGAGACAAAGCATTGTGGATGGCATGAGGACAATCGCTTTGAAACTTGAATTTGGAGTATCCCTCAACCAGACATTTGACAGGACTCTAGCTGTTCATTTCACTGACCCTTTTCATGTGAGCACACGAGTTGTAGATAAATGCAATGATGGTACTTTGCTTTTGCAGGTTACGCTACATTCTCAAGTGAAAGCCACTTTAACCATCTATGATGCTTGGCTCGTCCTCCAAGATGGATTTGTTCACACTGGACAAGGTGATGGAAGGCCAACTTCAGACTTCTTTCCTCTTGTGATTGCTCCAACTGCTAAAGCCGGTATTCTGTTCTGTATATGCTTAGGGACTACAATTTCTGGAGATGAAGCCAAGGCACCACAACCAGAGAGTGTGTTGAACATCAGATATGGAATTGCTGGTAATAGAACAATCGGAGCTCATACGCCTGTCACTGTGGAACCTGCTGGATCTGAGGGTTCTACACAGGATTTAATCTTCAGGAGTGCTCTTGTTTTACAGAGACCTGTGATGGATCCGTGCCTTGCAGTTGGTTTTCTTCCTCTTACTTCAGGAGGCCTTAGAGTTGGGCAGCTAGTAACCATGAAATGGAGAGTTGAAAGGTTGAAGGATTTTGATGAGAATGCAGTTTCTCAAAACAACGATGAGGTATTATACGAAGTCAATGCAAATTCTGAGAATTGGATGATTGCCGGGAGGAAGAGAGGCCATGTATCGCTCTCAACAAAGCAAGGTTCGAGGATAGTTATTTCTATTTTGTGCATGCCACTGGTGGCCGGATACGTACATCCCCCAAAGCTTGGGCTTCCAAGCGTTGATGAGGCAAATATAAGTTGTAACCCTGCTGGCCCCCACCTGGTCTGTGTTTTGCCTCCTGTTTTCAGCTCTTCTTTCTGTATTCCAGCATGA 3780 0.4288 MANYLAHFQTIKNSCDRLVIAVEDVSDLWPAVKKGFEERLPFKRACLNNKTRNPVFVEKLAAEFILTTDPRLRSRFPQEQLLFWFREPYATVVLVSCEDLDEFKTILKPRLKLIVQNDEREWCIVFVSKAHPNNDQATKMAKKVYARLEVDFSSKKRERCCKLDIHSPEANFWEDLESKIMESIRNTLDRRVQFYEDEIRKLSEQRLMPIWNFCNFFILKESLAFMFEMAHLHEDSLREYDELELCYLETVNVAGKQRDFGGIDRGDDQAALLNPGNKLLTQIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALALHERMLPFCMREVWVVTACLALINATASHYNDGFVAPDIEKEFYRIQGNLYSLCRVKFMRLAYLIGYGTEIERSPVNSASLSMLSWPMPAVWPPVPPDASSMVLEKEKTILQATPRVKHFGIQRKPLPLEPSILLREANRRRASLSAGNMVEMFEGRPIFVDGSDSDASLRMSPSSKVHAISMTRTNSSPINFESSIDRPMRLAEIYVAAEHALQNTISDTDLWKSLLSVEEFEKKYLELTKGAADNYHRSWWKRHGVVLDGEIAAVCYRHGNFDLAAKSYEKVCALYAGEGWQDLLAEVLPKLAECQKILNDQAGYLSSCVRLLSLDKGLFSTKERQAFQSEVVRLAHSEMKHPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITLEVLSLTLAAIFNVDEGVKALRSSAAPILKPGRNTITLALPPQKPGSYVLGVLTGQIGQLRFRSHSFSKGGPADSDDFMSYEKPARPILKVSKPRPLVDLAAAISSALLMNEPQWVGIIVRPINYSLKGAVLYIDTGPGLKIEESHPIEIERHSDVSQSATDMESCDQARKKDSSVVIEEFKQLTLQNGRIELPDWASNITSVIWFPISAISDKLARGTSSVTPQRQSIVDGMRTIALKLEFGVSLNQTFDRTLAVHFTDPFHVSTRVVDKCNDGTLLLQVTLHSQVKATLTIYDAWLVLQDGFVHTGQGDGRPTSDFFPLVIAPTAKAGILFCICLGTTISGDEAKAPQPESVLNIRYGIAGNRTIGAHTPVTVEPAGSEGSTQDLIFRSALVLQRPVMDPCLAVGFLPLTSGGLRVGQLVTMKWRVERLKDFDENAVSQNNDEVLYEVNANSENWMIAGRKRGHVSLSTKQGSRIVISILCMPLVAGYVHPPKLGLPSVDEANISCNPAGPHLVCVLPPVFSSSFCIPA* 1260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0326 1259 PANTHER EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1 8 1258 IPR045126 GO:0048193|GO:1990071
Vvi19g0326 1259 Pfam Trafficking protein particle complex subunit 10, TRAPPC10 1144 1226 IPR022233 -
Vvi19g0326 1259 Pfam Foie gras liver health family 1 583 657 IPR021773 -
Vvi19g0326 1259 Coils Coil 185 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0326 Vvi-Chr19 3476010 3512868 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0326 K20307 - vvi:100253761 2516.11