Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0315 ATGGAAATTAATAATCAAATTCAGATATTTTTCCTCACTAACTTGCCATCTTTGCTTGTGTTTCTGTGTTGTGCTGAGGAAATCAGCAGAGCTGAATTCCCAGATGGGTTCTTGTTTGGAACTGCTACTTCTGCATACCAGATTGAAGGAGCATTTTTGGAAGATGGGAAGACTCTGAGCAACTGGGATGTTTTCAGCCACATTCCAGGAAAAATTGAAAGAGGAGAGAACGGTGATGTCGCTGTTGATCATTACCATCGTTACTTGGAAGACATTGAGCTAATGCATTCTCTCGGGGTGAATGCCTACCGGTTTTCCATTTCTTGGGCCAGGGTCTTACCTAGAGGAAGATTTGGTTCGATTAATCCAGCAGGAGTTGAGTTTTATAACAAAATTATAGATTGTCTCTTGCTCAAGGGAATCGAGCCATTTGTTACCATAAGCCATCATGACATACCACAGGAACTCGAGCACGGATATGGGGGTTTCCTCAGTCCTTTAGTACAGGATGATTTTGTTCTTTTTGCCAAAACTTGTTTTGAGAATTATGGTGACCGGGTAAAGTACTGGACTACTTTCAATGAGCCAAACATATATGCAGACATGGGGTACATTAGGGGTGTTTATCCTCCAGGTCATTGTTTAGAACCTTACCACAACTGTTCTGCTGGAAATTCCGAAAGGGAGCCCTTATTGGTGGTGCACAACATGTTAATATCACATGCCAAGGCTGCTTATATTTATCGTGAGCGTTATCAGCTCAAGCAAGGTGGTAGTATAGGGGTGGTTGTGCATGCATTCATGTATGAACCCATAAGTGACCAAGAATGTGACCGTGAAGCTGCAAGTAGGGCCTTGGCCTTCAATATTGCCTGGGTGTTGGATCCCCTTCTAAATGGAGATTACCCTCCTGAGATGTATCGTTTGCTTGGGGAGAACATGCCAAAGTTCTCACCTGATGAACTGAAGAAAATAAAAGGGAGTATCGACTTCATTGGCATTAACCATTATTCAAGTCTATATGCTGAAAACTGCAGCTATTCTCCTAGCAAGCTAGGGTGCCAGGCAATCAAAGGCTTTGTTTACACGACTGGAGAAAGAGATGGGGTTCCAATTGGGGAGGAGACAGCAATACCAAGGTTTTATGTTGTTCCAAGCGGACTAGAGAAACTCATTGATTATCTGAAGACAAGATACAACAACAAGCCTATATTTGTCACTGAAAATGGGCTATCTCAAATGGACCAACCTGAAGAAAGAAACAGAGTGTTATTGAATGATACCAAAAGAGTTGAATATCACAAGGGCTATCTTGCCTCCTTAGCTCAGGCAATTCGGAAAGGAGCAGATGTACGAGGCTATTTTGTTTGGAGTTTGCTGGACAACTTTGAATGGACTAATGGTTACAGTATAAGGTTTGGGCTTTACTATGTTGACTACAAAACGCTCTGCCGGATTCCCAAGTTTTCTTCAAAATGGTATACAAGTTTCCTCAGTTACAATAGCCAAAGAAATAGGAATGGGATCATTAGAAGATCTCCCATGAACAGTGCTGTAATTTCATTGAAGGCTGGAAAGATGGAAATATAA 1590 0.4176 MEINNQIQIFFLTNLPSLLVFLCCAEEISRAEFPDGFLFGTATSAYQIEGAFLEDGKTLSNWDVFSHIPGKIERGENGDVAVDHYHRYLEDIELMHSLGVNAYRFSISWARVLPRGRFGSINPAGVEFYNKIIDCLLLKGIEPFVTISHHDIPQELEHGYGGFLSPLVQDDFVLFAKTCFENYGDRVKYWTTFNEPNIYADMGYIRGVYPPGHCLEPYHNCSAGNSEREPLLVVHNMLISHAKAAYIYRERYQLKQGGSIGVVVHAFMYEPISDQECDREAASRALAFNIAWVLDPLLNGDYPPEMYRLLGENMPKFSPDELKKIKGSIDFIGINHYSSLYAENCSYSPSKLGCQAIKGFVYTTGERDGVPIGEETAIPRFYVVPSGLEKLIDYLKTRYNNKPIFVTENGLSQMDQPEERNRVLLNDTKRVEYHKGYLASLAQAIRKGADVRGYFVWSLLDNFEWTNGYSIRFGLYYVDYKTLCRIPKFSSKWYTSFLSYNSQRNRNGIIRRSPMNSAVISLKAGKMEI* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0315 529 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 37 51 IPR033132 -
Vvi19g0315 529 PRINTS Glycosyl hydrolase family 1 signature 328 342 IPR001360 GO:0004553|GO:0005975
Vvi19g0315 529 PRINTS Glycosyl hydrolase family 1 signature 404 412 IPR001360 GO:0004553|GO:0005975
Vvi19g0315 529 PRINTS Glycosyl hydrolase family 1 signature 427 438 IPR001360 GO:0004553|GO:0005975
Vvi19g0315 529 PRINTS Glycosyl hydrolase family 1 signature 472 484 IPR001360 GO:0004553|GO:0005975
Vvi19g0315 529 PRINTS Glycosyl hydrolase family 1 signature 448 465 IPR001360 GO:0004553|GO:0005975
Vvi19g0315 529 FunFam Beta-glucosidase 12 19 500 - -
Vvi19g0315 529 SUPERFAMILY (Trans)glycosidases 27 498 IPR017853 -
Vvi19g0315 529 ProSitePatterns Glycosyl hydrolases family 1 active site. 404 412 IPR018120 -
Vvi19g0315 529 PANTHER GLYCOSYL HYDROLASE 32 503 IPR001360 GO:0004553|GO:0005975
Vvi19g0315 529 Pfam Glycosyl hydrolase family 1 31 501 IPR001360 GO:0004553|GO:0005975
Vvi19g0315 529 Gene3D Glycosidases 20 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0315 Vvi-Chr19 3377552 3381636 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0315 33 498 Glycoside Hydrolase AT4G21760 52.878 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0315 K05350 - vvi:104877310 1096.65