Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0313 ATGCATCGTGCCTCAGCAATGATGTTGCAGCGCCGAATTATGAGCAGCCGGCAGTCGTGCGACGTCTTCATTAACCACCGAGGCATCGACACCAAGAGAACAGTGGCGACCTTGCTCTATGACCACCTCACAATGCTCAACATGAGGCCTTTCCTGGACAACAAGACGATGAAGCCGGGGGACAAGCTGTTTGATAAAATCGACAGTGCGATTCGGGGTTGTAAGATCGGCGTGGCCGTCTTTTCCCCGCATTATTGCGAGTCATACTTCTGCCTCCATGAACTGGCTCTGTTCATGGAGTCCAACAAGAAGGTTATCCCCATCTTCTGCGATGTCAAGCCCTCCCAGCTTCGGGTGGTCGACAATGGAAGTTGCTCCCAGAATGAGTTGCAGAGGTTTAACCGAGCTCTGGAAGAAGCCAAGTACACCGTGGGGCTATCCTTCGACTCCTTAAAAGGGAACTGGTCTGAGGTGGTGACAAGCGCTTCCGACATAGTGATCAAGAGCTTGATAGAGCTTGAAAATGAGCGGAAGGTACGCCAGTGA 546 0.5201 MHRASAMMLQRRIMSSRQSCDVFINHRGIDTKRTVATLLYDHLTMLNMRPFLDNKTMKPGDKLFDKIDSAIRGCKIGVAVFSPHYCESYFCLHELALFMESNKKVIPIFCDVKPSQLRVVDNGSCSQNELQRFNRALEEAKYTVGLSFDSLKGNWSEVVTSASDIVIKSLIELENERKVRQ* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0313 181 SMART till_3 19 165 IPR000157 GO:0007165
Vvi19g0313 181 ProSiteProfiles TIR domain profile. 18 141 IPR000157 GO:0007165
Vvi19g0313 181 PANTHER COP1-INTERACTING PROTEIN-RELATED 16 178 - -
Vvi19g0313 181 Gene3D - 14 173 IPR035897 -
Vvi19g0313 181 Pfam TIR domain 21 119 IPR000157 GO:0007165
Vvi19g0313 181 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 138 IPR035897 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0313 16 149 Miscellaneous Gene Families AT1G57670 32.000 5.12e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0313 - - vvi:100257284 353.984