Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0308 ATGAGCAAAGCCGGCGACGAAGACGACGACGACGAGTGTTTCTACGAGTCTCTCGATCGGGTCCTCTCGTCCTCCTGCTCCTGTTCCTCCTCCAACTCCGATGATGATGCGGATCCGAATGCCTCGCCCAATTATGCTTCCGAGCACCCCTTTCCCATCCCCAAATTCCCCATTGGTGCTTCCAAATACGATATCTGGATCTCCGAGCCTTCCTCCATTGAAGAGCGCCGTTCGCGTCTTCTTCGCGAAATGGGCCTTAGCAACGACCCGTCTCTGTCCCGGGTGAAACCCACCGCTGATCGAAGCAACGGCGATATTGGCCGATCGGTTTCGTCCGATCGATTGGCCGGTCAAGGAGAGGCTGGTGTGGTCATTTGTCGATCGAAATCGGACGGTGCAAAGGATCAGTGTAATTCGTCAGTTTGTTCTCCTCCAATTCTTTCTATTTGTTCGGTTGTAAATAATAGCAAACTTGTTAATTCGCGAAGTAGTGGAAGTAATGGATCTCCGATTGCCAATGCTGCTTCTGCTTCGCCCAATAAGCCTCCCACCGGAAAAATGTGTAGGCGGGTGGATGAAACTAGGGGTGATTCCACAAAATCGGAGCCTAGTTTTGGTCGCAATTCTTTTTCTGGTTCTGGGAATGGGACTGGTGGAGAGTGTGATGAGGATTCGGATTGTAATGTGGTTGCGAGGACAGTCCCTCATGACCAAGTATGCACAATTAAGAATCTTGATAATGGGAAGGAGTTTGTTGTGAATGAGCTTAGGGAAGATGGTATGTGGAACAAGCTTAAGGAAGTGGGGACAGACAGGCAATTGACTATGGAGGAGTTTGAAATGTGCGTTGGGCATTCACCTATTGTTCAAGAATTGATGAGGAGGCAAAACGTGGAGGAGGGTAATAAGGATAATTTGGATATAAATGTTAATGGGGGTGTTGGGGGTGGATCGAAGTTGAAAAAGAAAGGGGGTTGGTTCAAGAGCATCAGGAGTGTTGCTAGTTCGGTGACTGGGCATAGAGAGAGACGGAGTAGTGATGAGCGGGATACATCGTCTGAGAAGGGTGGGCGGAGGTCGAGTTCTGCCACAGATGATAGCCAGGAGGTTTCATTCCATGGTCCAGAGAGAATTAGGGTTCGGCAGTATGGGAAGTCATGCAAAGAGCTTACTGCACTTTATAAGAGCCAGGAGATACAAGCCCATAATGGGTCAATTTGGAGTATTAAGTTTAGTTTGGATGGCAGGTATCTTGCAAGTGCAGGTGAGGATTGTGTTATTCATGTGTGGCAGGTTGTTGAAACTGAGAGGAAAGGGGATCTATTGACAGAGAAACCAGAAGATGGGAATTTGAATCTTTTGTTTGTGGCCAGTGGATCCCCAGAACCAACTTCAATGTCACCAAATGTGGACAACAATTCATCAGAAAAAAAGAGGAGGGGGAGGTCATCTGTAAGCCGGAAATCAGTGAGTTTGGACCACATTAAGGTGCCAGAGACTGTGTTTGGGCTTTCAGAAAAGCCTTTTTGTTCATTCCAAGGACATGGTGATGATGTGCTTGACCTTTCATGGTCCTCCAAGTCTCAGCAACTGCTCTCATCTTCAATGGACAAAACAGTTCGGTTGTGGCACTTGTCTAGCAAGTCCTGCTTGAAAATATTCTCACACAGTGATTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGCGGATCCCTTGATGCTAAGGTTCGCATTTGGAGCATACCCGATCGTCAAGTTGTTGATTGGAATGATCTGCATGAGATGGTCACTGCTGCCTGCTATACTCCAGATGGTCAGGGTGCATTAGTTGGGTCATACAAAGGGAGCTGTAGATTATACAACACATCTGAAAATAAGTTGCAGCCAAAAGGTCAAATAAATCTGCAGAATAAGAAAAAGAAACCTCATCACAAGAAAATCACTGGTTTCCAGATTCACGAATTCGGGTCATTGATGGTGTTGATCTGA 2007 0.4649 MSKAGDEDDDDECFYESLDRVLSSSCSCSSSNSDDDADPNASPNYASEHPFPIPKFPIGASKYDIWISEPSSIEERRSRLLREMGLSNDPSLSRVKPTADRSNGDIGRSVSSDRLAGQGEAGVVICRSKSDGAKDQCNSSVCSPPILSICSVVNNSKLVNSRSSGSNGSPIANAASASPNKPPTGKMCRRVDETRGDSTKSEPSFGRNSFSGSGNGTGGECDEDSDCNVVARTVPHDQVCTIKNLDNGKEFVVNELREDGMWNKLKEVGTDRQLTMEEFEMCVGHSPIVQELMRRQNVEEGNKDNLDINVNGGVGGGSKLKKKGGWFKSIRSVASSVTGHRERRSSDERDTSSEKGGRRSSSATDDSQEVSFHGPERIRVRQYGKSCKELTALYKSQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVETERKGDLLTEKPEDGNLNLLFVASGSPEPTSMSPNVDNNSSEKKRRGRSSVSRKSVSLDHIKVPETVFGLSEKPFCSFQGHGDDVLDLSWSSKSQQLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCRLYNTSENKLQPKGQINLQNKKKKPHHKKITGFQIHEFGSLMVLI* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0308 668 Pfam WD domain, G-beta repeat 398 430 IPR001680 GO:0005515
Vvi19g0308 668 Pfam WD domain, G-beta repeat 507 543 IPR001680 GO:0005515
Vvi19g0308 668 Pfam WD domain, G-beta repeat 549 586 IPR001680 GO:0005515
Vvi19g0308 668 MobiDBLite consensus disorder prediction 161 180 - -
Vvi19g0308 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 512 553 IPR001680 GO:0005515
Vvi19g0308 668 FunFam Transducin/WD40 repeat-like superfamily protein 357 460 - -
Vvi19g0308 668 MobiDBLite consensus disorder prediction 473 490 - -
Vvi19g0308 668 MobiDBLite consensus disorder prediction 161 224 - -
Vvi19g0308 668 SUPERFAMILY WD40 repeat-like 395 661 IPR036322 GO:0005515
Vvi19g0308 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 399 432 - -
Vvi19g0308 668 MobiDBLite consensus disorder prediction 201 218 - -
Vvi19g0308 668 MobiDBLite consensus disorder prediction 24 53 - -
Vvi19g0308 668 MobiDBLite consensus disorder prediction 85 114 - -
Vvi19g0308 668 Gene3D - 317 460 IPR015943 GO:0005515
Vvi19g0308 668 MobiDBLite consensus disorder prediction 91 109 - -
Vvi19g0308 668 MobiDBLite consensus disorder prediction 457 490 - -
Vvi19g0308 668 SMART WD40_4 392 431 IPR001680 GO:0005515
Vvi19g0308 668 SMART WD40_4 505 544 IPR001680 GO:0005515
Vvi19g0308 668 SMART WD40_4 547 586 IPR001680 GO:0005515
Vvi19g0308 668 SMART WD40_4 589 627 IPR001680 GO:0005515
Vvi19g0308 668 MobiDBLite consensus disorder prediction 186 200 - -
Vvi19g0308 668 MobiDBLite consensus disorder prediction 457 472 - -
Vvi19g0308 668 MobiDBLite consensus disorder prediction 337 362 - -
Vvi19g0308 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 399 432 IPR001680 GO:0005515
Vvi19g0308 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 512 547 - -
Vvi19g0308 668 PANTHER WD REPEAT DOMAIN 44 6 668 IPR040324 -
Vvi19g0308 668 PRINTS G protein beta WD-40 repeat signature 418 432 IPR020472 -
Vvi19g0308 668 PRINTS G protein beta WD-40 repeat signature 573 587 IPR020472 -
Vvi19g0308 668 PRINTS G protein beta WD-40 repeat signature 531 545 IPR020472 -
Vvi19g0308 668 MobiDBLite consensus disorder prediction 337 376 - -
Vvi19g0308 668 Gene3D - 500 666 IPR015943 GO:0005515
Vvi19g0308 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 553 587 IPR001680 GO:0005515
Vvi19g0308 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 553 587 - -
Vvi19g0308 668 MobiDBLite consensus disorder prediction 24 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0308 Vvi-Chr19 3303479 3310413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0308 394 600 Miscellaneous Gene Families AT5G08390 22.857 7.66e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0308 K20241 - vvi:100264190 1179.08