Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0307 ATGGCTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTTCAGACCATGTCAAGGCTGACTTCAGCTCTTCTGCATTGAGGAACAAGAGAAAACCATCCGTTGGAGCTATCAGAGCCCAGACCGCAGCTACAACTCCGGCCATCACCCGGGCTACACCAGAAGGGAAAAAAACTCTAAGAAAGGGAACTGTTGTGATCACCGGAGCCTCATCTGGACTGGGTCTAGCCACAACCAAGGCTCTGGCTGAAACAGGGAAATGGCACATCATTATGGCCTGCAGGGACTTCCTAAAAGCCGAAAGAGCTGCAAGGTCAGCCGGCCTTTCTAAGGAAAACTATACCGTAATGCACCTAGACCTTGCCTCACTTGACAGTGTCCGGCAATTTGTTGATAACTTCAAGCGATCAGAACGGCCCCTTGATGTTCTGGTCTGCAATGCTGCTGTCTACCTTCCAACTGCTAAGGAGCCTACATTCACTGCTGATGGGTTTGAGCTTAGCGTTGGAACTAACCATCTTGGGCACTTCCTTCTCGCCCGGTTGCTGCTTGATGATTTGAAGCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGGACTTGAGGGGAATGGCAGGAGGTCTAAATGGGCTGAACAGCTCAGCCATGATTGATGGTGGAGCTTTTGACGGTGCCAAGGCATACAAGGACAGCAAGGTATGCAACATGCTCACCATGCAAGAGTTCCACCGCCGATACCACGAGGACACTGGCATCACCTTCGCCTCCCTCTACCCAGGTTGCATTGCTACAACTGGCTTGTTTAGGGAGCATATTCCCTTGTTCAGGCTTCTTTTCCCTCCATTCCAGAAGTTCATTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAACAAGAACTCAGCTTCATTTGAGAACCAGTTGTCTCAGGAAGCTAGTGATGCAGACAAGGCTCGTAAGGTTTGGGAACTTAGCGAGAAACTTGTCAGATTGGCTTAA 1191 0.4962 MAMQAAALVPSAFSIPKEGKGSASFKESGLFGVSLSDHVKADFSSSALRNKRKPSVGAIRAQTAATTPAITRATPEGKKTLRKGTVVITGASSGLGLATTKALAETGKWHIIMACRDFLKAERAARSAGLSKENYTVMHLDLASLDSVRQFVDNFKRSERPLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLARLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGMAGGLNGLNSSAMIDGGAFDGAKAYKDSKVCNMLTMQEFHRRYHEDTGITFASLYPGCIATTGLFREHIPLFRLLFPPFQKFITKGYVSEEESGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSQEASDADKARKVWELSEKLVRLA* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0307 396 PANTHER PROTOCHLOROPHYLLIDE REDUCTASE C, CHLOROPLASTIC 1 396 IPR005979 GO:0016630
Vvi19g0307 396 MobiDBLite consensus disorder prediction 54 76 - -
Vvi19g0307 396 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 80 364 IPR036291 -
Vvi19g0307 396 Gene3D - 71 395 - -
Vvi19g0307 396 CDD LPOR_like_SDR_c_like 83 395 - -
Vvi19g0307 396 Pfam short chain dehydrogenase 85 228 IPR002347 -
Vvi19g0307 396 NCBIfam protochlorophyllide reductase 82 396 IPR005979 GO:0016630
Vvi19g0307 396 PRINTS Glucose/ribitol dehydrogenase family signature 293 310 IPR002347 -
Vvi19g0307 396 PRINTS Glucose/ribitol dehydrogenase family signature 160 171 IPR002347 -
Vvi19g0307 396 PRINTS Glucose/ribitol dehydrogenase family signature 85 102 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0307 Vvi-Chr19 3298485 3300417 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0307 K00218 - vvi:100255647 748.814