Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0306 ATGGCAGACAGATTCTTCCCAAACGAAATGCCGGAGACGGCAGTGGAAGCGGAGGAAACAAGCGCTCAAAACAGTGGAGACTCTCTGATAAAGCTCCTCTCTTTTCCATACGAAACTCTCTCCCAACAATTCGAGCGAGCTGCTTTGGATGTCAAAGACGCTGTTGTCAGGGAGACATGGGCGCTTGCTGGAAAACGCGTACAGGACTATGCTTTGTATACTGGGGCTCTTGGGACTGCGTTTTTGCTCTTCAAGGCCTATCAGATTACTAACAACAGGGATGATCTTAATGTTTGTTCCGAGATTGTCAAGGCTTGTGATTCTGCTTCCGCCACCTCTGGGCGTGTGACATTCATATGTGGGCAAGCTGGTGTTTATGCTATTGGTGCTGTTGCGGCTAAGCATGCTGGGGATGAAAGATTGCTTGGTCGCTACTTAACTCAATTTAAAGAGATTAAGCTTCCTAAGGATTTGCCAAATGAGTTACTATATGGGCGAGGAGGGTTCTTATGGGCATGCTCATTCTTAAATAAGCATATTGGTAAAGACACAATATCTTCTGCTCGCATGGAAATTATCAAGTCGGGTAGAGAAATGGCAAAAAGGGAAAGATGCCCATTGATGTATGAATGGCACGGGAAGAAGTATTGGGGTGCTGCCCATGGGTTAGCGGGGGTTATGCATGTTTTGATGCACATGGAACTGAAACCAGACGAGGTGGAGGATGTCAAGGGTACCTTGCGTTATATGATCAAGAACCGTTTCCCCAGTGGGAATTATCCTTCAAGTGAAGGAAGTGAATCTGACCGCCTTGTGCATTGGTGTCATGGTGCTCCTGGTGTTGCTCTTACCCTTTTGAAAGCAGCTGAGGTTTTTGGAGACAAGGAGTTTCTGCAAGCAGCTGTGGATGCAGGGGAGGTGGTATGGAACAGAGGCCTGCTTAAGCGAGTTGGGATTTGTCATGGCATCAGTGGGAATACCTATGTGTTTCTTTCACTCTACAGACTGACTGGTAATGTGGAGTTCTTGTACAGGGCCAAAGCATTTGCTTGTTTTTTACTCGACAGGGCCCAAAGGCTTATATCAGAGGGGAAGATGCATGGAGGTGATCGCCCTTATTCACTATTTGAAGGCATTGGAGGAATGACTTATCTGTTTCTGGACATGATCGAACCATCTGAGGCCAGGTTCCCAGGTTATGAACTTTAG 1209 0.4673 MADRFFPNEMPETAVEAEETSAQNSGDSLIKLLSFPYETLSQQFERAALDVKDAVVRETWALAGKRVQDYALYTGALGTAFLLFKAYQITNNRDDLNVCSEIVKACDSASATSGRVTFICGQAGVYAIGAVAAKHAGDERLLGRYLTQFKEIKLPKDLPNELLYGRGGFLWACSFLNKHIGKDTISSARMEIIKSGREMAKRERCPLMYEWHGKKYWGAAHGLAGVMHVLMHMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVALTLLKAAEVFGDKEFLQAAVDAGEVVWNRGLLKRVGICHGISGNTYVFLSLYRLTGNVEFLYRAKAFACFLLDRAQRLISEGKMHGGDRPYSLFEGIGGMTYLFLDMIEPSEARFPGYEL* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0306 402 PANTHER LANC-LIKE PROTEIN 1 402 - -
Vvi19g0306 402 FunFam LanC-like protein 2 1 402 - -
Vvi19g0306 402 CDD euk_LANCL 72 398 - -
Vvi19g0306 402 PRINTS Eukaryotic LanC-like protein family signature 205 217 IPR020464 -
Vvi19g0306 402 PRINTS Eukaryotic LanC-like protein family signature 251 266 IPR020464 -
Vvi19g0306 402 PRINTS Eukaryotic LanC-like protein family signature 2 15 IPR020464 -
Vvi19g0306 402 PRINTS Eukaryotic LanC-like protein family signature 388 402 IPR020464 -
Vvi19g0306 402 PRINTS Eukaryotic LanC-like protein family signature 288 309 IPR020464 -
Vvi19g0306 402 SUPERFAMILY LanC-like 67 402 - -
Vvi19g0306 402 SMART LANC_like_2 66 402 IPR007822 GO:0031179
Vvi19g0306 402 PRINTS LanC-like protein superfamily signature 271 291 IPR007822 GO:0031179
Vvi19g0306 402 PRINTS LanC-like protein superfamily signature 160 175 IPR007822 GO:0031179
Vvi19g0306 402 PRINTS LanC-like protein superfamily signature 317 330 IPR007822 GO:0031179
Vvi19g0306 402 PRINTS LanC-like protein superfamily signature 69 87 IPR007822 GO:0031179
Vvi19g0306 402 PRINTS LanC-like protein superfamily signature 216 232 IPR007822 GO:0031179
Vvi19g0306 402 PRINTS LanC-like protein superfamily signature 372 389 IPR007822 GO:0031179
Vvi19g0306 402 Gene3D - 1 402 IPR012341 GO:0005975
Vvi19g0306 402 Pfam Lanthionine synthetase C-like protein 67 402 IPR007822 GO:0031179
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0306 Vvi-Chr19 3289892 3292643 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0306 - - vvi:100250470 811.986