Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0300 ATGGCAAACCGTTATTGGTCTGTTTCTTTTGAGGAATTGCCCTCACATTTGATTCTAGAGATCTTGAGCTCAGGGCGGTTGAGTGCAGTGGATCTTGTTTGTTTAGAGCTGACATCACGGACTTTTGGTGCAAGTCATGGGTTGTACCCACACAAGTTTAGGTCTCTGGTGGATTTTGCGGCGTTTCAGCTATGTGGTTCTCATCCCATTTATGCAGCATTGAGTTTGAATGCGCAGAAAGATCTCTTTGATCGGTGTGGGGAAAATTGGAAGCGGGTTTTGAGATTCTTGCAATCTGTGGAGCAGTCATCATATATAAGCGAGACATCAGCAGGCAATATGCAGATTACAACTGGACGATATCACACATTGCTGATCAAGGATTCATCAGTGTACTCTTGTGGTTCAAGTTTGTGTGGTGTTCTTGGTCATGGTCCTGAAACAACACAATGTGTGGCATTTAGCAGGATTAATTTCCCACCTTTGGCACATGTGGCCCAAGTCTCAGCCTCCCACAATCATGCAGCCTTTGTCATGCAGTCTGGAGAGGTTTTCACCTGTGGAGATAATTCATCCTTTTGCTGTGGGCATGGAGATACGGTTCGTCCCATATTCCGGCCCAGACTTGTTGAAGCACTGAAGGGAGTTCCTTGCAAGCAGGTTGCTGCTGGGCTTAGTTTTACTGTGTTTCTCACAATGAAAGGCCATGTCTATACATGTGGAACGAACACACATGGCCAGCTTGGTCATGGTGATACTGTTGACAGACGGACCCCCAAAATTGTTGAACTACTTGAAGGTGTTGGTCCTGTGGTTCAGATTGCTGCAGGTCCAAGTTATGCCATGGCCGTAACTGATGATGGGACTGTCCACTCTTTCGGGTCTGGGTCCAATTTCTGTCTTGGCCATGGTGAGCAGCATAATGAGCTCCGACCACGTGCAATCCAATCATTTAGAAGAAAGACTATTCATGTGGTTCGCATCTCTGCTGGTGATGAGCATGTGGTGGCACTTGATTCCAGTGGATTTGTATATACCTGGGGCAAAGGTTATTGTGGTGCATTGGGCCATGGTGATGAGATTGATAAGACTACTCCTGAAATCTTAAGCAGCCTTAAGAGCCACCTTGCTGTGCAGGTTTGTGCACGGAAGAGGAAAACCTTCGTCTTGGTGGATACCGGTTCTGTATATGGCTTTGGATGGATGGGTTTTGGTAGTCTTGGGTTTCCAGACAGGGGAGCTTCTGATAAAGTCATGAGGCCTTGGATCCTTGATAGCTTAAGAGGCCACTACATTTCTCAAATAAGCACAGGTCTGTACCACACCGTTGCAGTCAATAATAAGGGGCAAATCTTTGGGTTTGGTGACAATGAAAGAGCACAACTTGGGCATGACACCTTGAGAGGATGCCCTGTACCTACTGAAATTTTTGTTCAAGAAGCAACTGATGATGCAGGCCGCGTCTCGGAAAGTAGGTGA 1479 0.4652 MANRYWSVSFEELPSHLILEILSSGRLSAVDLVCLELTSRTFGASHGLYPHKFRSLVDFAAFQLCGSHPIYAALSLNAQKDLFDRCGENWKRVLRFLQSVEQSSYISETSAGNMQITTGRYHTLLIKDSSVYSCGSSLCGVLGHGPETTQCVAFSRINFPPLAHVAQVSASHNHAAFVMQSGEVFTCGDNSSFCCGHGDTVRPIFRPRLVEALKGVPCKQVAAGLSFTVFLTMKGHVYTCGTNTHGQLGHGDTVDRRTPKIVELLEGVGPVVQIAAGPSYAMAVTDDGTVHSFGSGSNFCLGHGEQHNELRPRAIQSFRRKTIHVVRISAGDEHVVALDSSGFVYTWGKGYCGALGHGDEIDKTTPEILSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGASDKVMRPWILDSLRGHYISQISTGLYHTVAVNNKGQIFGFGDNERAQLGHDTLRGCPVPTEIFVQEATDDAGRVSESR* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0300 492 Pfam Regulator of chromosome condensation (RCC1) repeat 234 284 IPR000408 -
Vvi19g0300 492 Pfam Regulator of chromosome condensation (RCC1) repeat 181 231 IPR000408 -
Vvi19g0300 492 Pfam Regulator of chromosome condensation (RCC1) repeat 342 382 IPR000408 -
Vvi19g0300 492 Pfam Regulator of chromosome condensation (RCC1) repeat 287 338 IPR000408 -
Vvi19g0300 492 SUPERFAMILY RCC1/BLIP-II 378 477 IPR009091 -
Vvi19g0300 492 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 435 445 IPR000408 -
Vvi19g0300 492 SUPERFAMILY RCC1/BLIP-II 113 412 IPR009091 -
Vvi19g0300 492 PRINTS Chromosome condensation regulator RCC1 signature 328 344 IPR000408 -
Vvi19g0300 492 PRINTS Chromosome condensation regulator RCC1 signature 438 456 IPR000408 -
Vvi19g0300 492 PRINTS Chromosome condensation regulator RCC1 signature 344 358 IPR000408 -
Vvi19g0300 492 PRINTS Chromosome condensation regulator RCC1 signature 237 253 IPR000408 -
Vvi19g0300 492 PRINTS Chromosome condensation regulator RCC1 signature 183 199 IPR000408 -
Vvi19g0300 492 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 235 287 IPR000408 -
Vvi19g0300 492 Pfam Regulator of chromosome condensation (RCC1) repeat 432 460 - -
Vvi19g0300 492 Gene3D - 74 320 IPR009091 -
Vvi19g0300 492 Gene3D - 321 488 IPR009091 -
Vvi19g0300 492 PANTHER BTK-BINDING PROTEIN-RELATED 196 323 - -
Vvi19g0300 492 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 342 393 IPR000408 -
Vvi19g0300 492 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 394 448 IPR000408 -
Vvi19g0300 492 CDD F-box_SF 11 42 - -
Vvi19g0300 492 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 182 234 IPR000408 -
Vvi19g0300 492 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 288 341 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0300 Vvi-Chr19 3256941 3262554 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0300 - - vvi:100262257 1010.36