Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0293 ATGGAGCGGGCGCTCAAAGCTGCACGAGCCTCTGGTTCACTCAACCTATCCAATCGCGCTCTCAGGGAAGTGCCCGATGAGGTATACAGAAGTCTGGATGCAATCGGGGAGGGGGAAAAGTGGTGGGAGGCTGTGGAATTACAAAAGCTTATTTTGGCCCATAATGATATCGAATCATTGAGAGAAGACTTGAAAAATTTATCCCTGTTGTCTGTGTTGAATCTTAGTAACAACAAGCTTGTCCACCTTCCAGCTGCTATTGGAGAGCTCCCCATGCTAAAATCATTGGATTTGTCACAAAACTCAATTGTTGATATTCCTGAAGTGATCGGATCAGCAACTTCTCTTGTCAAGCTTGACTGTTCAAACAACAAACTTAAGGATCTCCCAAATTCCCTCGGAAGATGTTCAAATTTATTAGAACTCAAGGCATCAAACAATTGTATTACCAGCTTACCTGAAGATCTGGCTCACTGTTTAAAGTTAATCAAACTAGATGTGGAGGGGAACAAGTTAACAATGCTATCTGAGAACATGATTGCATCATGGGTCCTTCTTACAGAACTTAATGCATCAAGAAACTTGTTGACTGGCTTGCCAGAGAATATTGGAAGGCTTTCACGTCTCATTCGTCTTGACTTTCATCAGAACAGAATTTCATCAATACCAGCATCAATAAAGGGCTGCTGTTCCCTTGCAGAGTTCTATATGGGGAATAATGTGTTGTCTTCGCTAACAGCAGAGATTGGGGCACTTTCTCTTTTAGGGACATTAGATCTTCACTCAAACCAGTTAAAGGAGTATCCTGTGGAGGCATGCAAGCTCCGTCTTCAAGTCCTAGATTTGTCAAATAATTCATTGTCTGGCTTGCCCCCTGAGATTGGTATGATGACAACTCTTCGAAAACTTGTGCTCACTGGCAATCCTCTGCGAACTCTTCGAAGCTCATTGGTGTCTGGACCTACACCTGCTTTGTTGAAGTTTCTGCGCAGTAGACTCTCTACAGATGAAGATTCTGAAGCTGCTACTACAGCAAAAGAGAATGTAGTCACCATGGCAGCTCGAATATCTATTACTTCAAAGGAACTTTCTTTGGAAGGTATGGGTTTGAGTGCTGTCCCAGCACAGGTATGGGAGTCGAGTGAAATTGTGAAAGTTGATCTTTCTAGGAATTCAATTCAAGAACTTCCACCCGAACTTACCTCATGTGTTTCCCTCCAGGCTTTGATTTTATCCAGGAACAAGATTCAAGAATGGCCAGGTGTAATTTTAAAGTCACTTCCTAACCTTTCATGCTTGAAGCTGGACAATAATCCACTCAGACAGATTCCAGCAGATGGATTTCAAGCTGTCTCCAAGCTCCAGATTCTGGATCTAAGTGTTCAATTAGACAGGCGAATGCAGCTATGTGAAGTCCCATCAGATATATTGAGCTTACAGCAACTGCAGATCCTCGACTTGAGCCAAAATTCCCTTCAATTGATTCCAGAGGGATTCAAAAATCTTACATCTCTTACCGAGCTTAACTTGTCTGACAATAGCATTGCAACACTTCCCCCAGAACTGGGATTGCTTGAACCCAGTCTACAGGCCTTACGACTTGATGGAAACCCATTGAGGAGCATCCGGAGGACAATTTTGGATAGAGGAACCAAAGCTGTTCTAAAATATTTGAAGGACAAAATTCCAGAGCACTAA 1698 0.4276 MERALKAARASGSLNLSNRALREVPDEVYRSLDAIGEGEKWWEAVELQKLILAHNDIESLREDLKNLSLLSVLNLSNNKLVHLPAAIGELPMLKSLDLSQNSIVDIPEVIGSATSLVKLDCSNNKLKDLPNSLGRCSNLLELKASNNCITSLPEDLAHCLKLIKLDVEGNKLTMLSENMIASWVLLTELNASRNLLTGLPENIGRLSRLIRLDFHQNRISSIPASIKGCCSLAEFYMGNNVLSSLTAEIGALSLLGTLDLHSNQLKEYPVEACKLRLQVLDLSNNSLSGLPPEIGMMTTLRKLVLTGNPLRTLRSSLVSGPTPALLKFLRSRLSTDEDSEAATTAKENVVTMAARISITSKELSLEGMGLSAVPAQVWESSEIVKVDLSRNSIQELPPELTSCVSLQALILSRNKIQEWPGVILKSLPNLSCLKLDNNPLRQIPADGFQAVSKLQILDLSVQLDRRMQLCEVPSDILSLQQLQILDLSQNSLQLIPEGFKNLTSLTELNLSDNSIATLPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEH* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0293 565 SUPERFAMILY L domain-like 249 540 - -
Vvi19g0293 565 ProSiteProfiles Leucine-rich repeat profile. 92 113 IPR001611 GO:0005515
Vvi19g0293 565 Pfam Leucine rich repeat 46 103 IPR001611 GO:0005515
Vvi19g0293 565 Pfam Leucine rich repeat 255 310 IPR001611 GO:0005515
Vvi19g0293 565 Pfam Leucine rich repeat 481 539 IPR001611 GO:0005515
Vvi19g0293 565 Pfam Leucine rich repeat 405 460 IPR001611 GO:0005515
Vvi19g0293 565 PRINTS Leucine-rich repeat signature 479 492 - -
Vvi19g0293 565 PRINTS Leucine-rich repeat signature 277 290 - -
Vvi19g0293 565 SUPERFAMILY L domain-like 43 320 - -
Vvi19g0293 565 ProSiteProfiles Leucine-rich repeat profile. 46 68 IPR001611 GO:0005515
Vvi19g0293 565 ProSiteProfiles Leucine-rich repeat profile. 276 297 IPR001611 GO:0005515
Vvi19g0293 565 Gene3D Ribonuclease Inhibitor 273 358 IPR032675 -
Vvi19g0293 565 ProSiteProfiles Leucine-rich repeat profile. 504 525 IPR001611 GO:0005515
Vvi19g0293 565 PANTHER - 186 312 - -
Vvi19g0293 565 SMART LRR_bac_2 67 86 - -
Vvi19g0293 565 SMART LRR_bac_2 136 155 - -
Vvi19g0293 565 SMART LRR_bac_2 90 109 - -
Vvi19g0293 565 SMART LRR_bac_2 184 202 - -
Vvi19g0293 565 SMART LRR_bac_2 479 498 - -
Vvi19g0293 565 SMART LRR_bac_2 502 522 - -
Vvi19g0293 565 SMART LRR_bac_2 113 132 - -
Vvi19g0293 565 SMART LRR_bac_2 159 178 - -
Vvi19g0293 565 SMART LRR_typ_2 90 113 IPR003591 -
Vvi19g0293 565 SMART LRR_typ_2 404 426 IPR003591 -
Vvi19g0293 565 SMART LRR_typ_2 252 275 IPR003591 -
Vvi19g0293 565 SMART LRR_typ_2 67 88 IPR003591 -
Vvi19g0293 565 SMART LRR_typ_2 479 501 IPR003591 -
Vvi19g0293 565 SMART LRR_typ_2 297 320 IPR003591 -
Vvi19g0293 565 SMART LRR_typ_2 114 136 IPR003591 -
Vvi19g0293 565 SMART LRR_typ_2 45 66 IPR003591 -
Vvi19g0293 565 SMART LRR_typ_2 161 182 IPR003591 -
Vvi19g0293 565 SMART LRR_typ_2 427 450 IPR003591 -
Vvi19g0293 565 SMART LRR_typ_2 527 549 IPR003591 -
Vvi19g0293 565 SMART LRR_typ_2 206 229 IPR003591 -
Vvi19g0293 565 SMART LRR_typ_2 276 296 IPR003591 -
Vvi19g0293 565 SMART LRR_typ_2 381 403 IPR003591 -
Vvi19g0293 565 SMART LRR_typ_2 137 159 IPR003591 -
Vvi19g0293 565 SMART LRR_typ_2 502 525 IPR003591 -
Vvi19g0293 565 Gene3D Ribonuclease Inhibitor 465 561 IPR032675 -
Vvi19g0293 565 Gene3D Ribonuclease Inhibitor 179 272 IPR032675 -
Vvi19g0293 565 Gene3D Ribonuclease Inhibitor 359 464 IPR032675 -
Vvi19g0293 565 Gene3D Ribonuclease Inhibitor 1 178 IPR032675 -
Vvi19g0293 565 ProSiteProfiles Leucine-rich repeat profile. 138 160 IPR001611 GO:0005515
Vvi19g0293 565 ProSiteProfiles Leucine-rich repeat profile. 115 136 IPR001611 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0293 250 537 Receptor kinase-like Gene Family AT4G08850 27.090 1.45e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0293 - - vvi:100252026 1031.17