Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0292 ATGGCAAAGAAAAAGGAGAGGAAAGTGAATGTGTCTGGAAAACCAAAGCATTCCCTTGATGTGAATAGAGGGAATGGGGATAAAGAAGGCCGAAGTGCTGCTACAGTGCGGCGCCTCAAGATGTACAATACAAGGCCAAAGCGTGATCGGAAAGGGAAAATTTTGAAGCATGAGCTTCAGTCCAAGGAGTTGCCTTCTACACGAATTCAACCAGATCGCAGATGGTTTGGGAATACTCGAGTTGTAAATCAGAAAGAGCTTGAATTTTTCCGTGAGGAGCTCCAAAGCCGGATGTCAAGTAGCTACAATGTTATCCTGAAGGAGAAGAAACTGCCCATGTCTCTATTAAATGATCACCAGAAGCAAGCACGAGTTCATCTGCTTGATACAGAGCCGTTTGAGGATGCATTTGGACCAAAGAAAAAGAGAATACGACCGAAGCTTATGGCGATGGATTATGAGTCTTTAGTTAAGAAAGCTGATGGTTCTCAGGATGCATTTGAGCAGAAGCATGCTGGCAGTGCGTATGCAGAAGGAAGTGAAGGAGATGGATTCAGGGACCTTGTCCGCCATACAATGTTTGAGAAGGGTCAAAGCAAACGTATCTGGGGTGAGCTCTACAAAGTGATAGACTCTTCAGATGTTGTTGTCCAGGTTTTGGATGCAAGGGATCCACAAGGTACAAGATGCTATCATTTAGAGAAACATTTGAAGGAGCATTGCAAACATAAACACATGATTCTTTTGTTAAACAAGTGTGATTTAATTCCTGCTTGGGCTACAAAAGGATGGCTCAGAGTGTTGTCTAAAGAATTCCCTACTCTAGCTTTCCATGCTAGCATCAACAAGTCTTTTGGCAAGGGTTCTCTTCTATCTGTTTTGAGACAATTTGCCCGCTTAAAAAGTGATAAGCAAGCAATATCTGTGGGATTTGTGGGGTATCCCAATGTTGGAAAATCATCAGTGATCAATACACTGCGAACAAAGAATGTTTGCAAGGTCGCTCCTATTCCAGGGGAAACAAAAGTGTGGCAGTACATTACCCTCACAAAGAGAATCTTCTTGATTGATTGCCCTGGAGTTGTTTACCAAAACAGCGACTCTGAAACAGATGTTGTACTGAAGGGTGTGGTACGTGTCACAAACTTGGAAGATGCTTCTGAACACATAGGAGAAGTTCTGAAACGAGTAAAGAAGGAGCACCTGGAAAGAGCATATAAGATTAAAGACTGGGATGATGAGAATGACTTTCTTGTTCAGCTATGCAAATTAACGGGCAAACTTTTAAAGGGTGGTGAGCCTGACTTGATGACTGTGGCAAAGATGGTCCTCCATGACTGGCAGAGAGGTAGAATCCCCTTCTTCGTTCCCCCTCCAAGGCAGCAGGAAGGTGACTCATCAGATGAGCCCAGTACTTTGGGCGTGGAGAAAGATACAGCAGTTGATGATAATCAGGCATCAGCTGCTATAAGAGCCATTGCAAATGTTATTTCATCCCAGCAGACTATGAATGTCCCTGTTCAAAAGGATCTTTTCAGTGAGAGAGAGTTGGAAGGTGACAACTCTGAGCTGCCTCGAGTCCTTGACTCATAA 1593 0.4363 MAKKKERKVNVSGKPKHSLDVNRGNGDKEGRSAATVRRLKMYNTRPKRDRKGKILKHELQSKELPSTRIQPDRRWFGNTRVVNQKELEFFREELQSRMSSSYNVILKEKKLPMSLLNDHQKQARVHLLDTEPFEDAFGPKKKRIRPKLMAMDYESLVKKADGSQDAFEQKHAGSAYAEGSEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCYHLEKHLKEHCKHKHMILLLNKCDLIPAWATKGWLRVLSKEFPTLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNSDSETDVVLKGVVRVTNLEDASEHIGEVLKRVKKEHLERAYKIKDWDDENDFLVQLCKLTGKLLKGGEPDLMTVAKMVLHDWQRGRIPFFVPPPRQQEGDSSDEPSTLGVEKDTAVDDNQASAAIRAIANVISSQQTMNVPVQKDLFSERELEGDNSELPRVLDS* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0292 530 Pfam NGP1NT (NUC091) domain 41 165 IPR012971 -
Vvi19g0292 530 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 203 364 IPR030378 GO:0005525
Vvi19g0292 530 Gene3D - 364 456 IPR023179 -
Vvi19g0292 530 MobiDBLite consensus disorder prediction 456 475 - -
Vvi19g0292 530 Pfam 50S ribosome-binding GTPase 309 395 IPR006073 GO:0005525
Vvi19g0292 530 MobiDBLite consensus disorder prediction 1 53 - -
Vvi19g0292 530 Gene3D - 193 363 IPR027417 -
Vvi19g0292 530 PANTHER GTP-BINDING PROTEIN-RELATED 28 488 - -
Vvi19g0292 530 CDD NGP_1 205 361 IPR024929 GO:0005730
Vvi19g0292 530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 436 IPR027417 -
Vvi19g0292 530 MobiDBLite consensus disorder prediction 1 35 - -
Vvi19g0292 530 FunFam Nucleolar GTP-binding protein 2 366 456 - -
Vvi19g0292 530 PRINTS GTP1/OBG GTP-binding protein family signature 309 329 IPR006073 GO:0005525
Vvi19g0292 530 PRINTS GTP1/OBG GTP-binding protein family signature 355 370 IPR006073 GO:0005525
Vvi19g0292 530 FunFam Nuclear/nucleolar GTPase 2 202 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0292 Vvi-Chr19 3098585 3107848 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0292 K14537 - vvi:100246891 1041.18