Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0284 ATGGCTTCATCCATCTTCAACAGACTCAAATCAAACCGTCACGTCTCTCAAACCCTCATTTCCAATGTGTGCTCGGTCAGATCAGTTTACACTGGAAGGTTTGCCAATATAAACCTCTATTCCCGAATCAGCCCTCTCGGTACCCCCAATTTGAGTCTTGTTCCAGTGCTTGATCAATGGGTGGAGGAGGGGAAAAAGGTCAGAGACGTCGAGCTTCACCGCATTATTCGCGATCTCCGCTCCCGGAAGCGCTACGCGCAGGCCTTGGAGGTTTCAGAGTGGATGAGTAGCAAGGAGCTCTGTCCATTTTCACCAAGTGCTCGTGCTGTGCAGTTGGATCTGATTGGTCAGGTCCGTGGGCTGGAATCTGCTGAGAACTACTTTAATAACATGAGTGCTGAAGAGAAAATTGACAAAATGTATGGTGCTCTGCTGAACTGTTATGTCAGAGAACGTGTCATTGATAAGTCCCTCTCCCATTTGCAGAAGATGAAGGAGTTGGGTTTTGCTTCCACTCCTCTCCCATACAATGGCCTTATGTGCCTCTATATAAATACTGACCAGCTTGAGAAAATCCCTGATGTGTTGTCAGAGATGCAGGAGAATGGTATTTCCCCTGATAACTTCAGTTATAGACTCTGCATAAACTCTTATGGAGCACGATCTGATCTGAACAGCATGGAGAAGATCCTTGAAGAAATGGAGAGCAAATCCCATATTCACATAGACTGGATGACTTATTCCATGGTGGCTAATTTCTACATAAAAGCAGGTCTTAATGAGAAGGCACTCTTTTTTCTGAAGAAAGCTGAAACAAAGTTACATAAAGATCCACTTGGCTACAATCATTTGATTTCACTATATGCAAGTCTCGGGAGTAAAGCTGAGATGATGAGATTGTGGGAACGTAGAAAAACTGCTTCTAAGAAGCTAATTAATCGAGATTATATAACCATGCTGGGATCTTTAGTAAAACTTGGTGAGCTCGAAGACACTGAGGCCTTGCTTAAGGAGTGGGAGTCATCTGGCAACTGTTATGATTTTCGAGTGCCTAATACACTTCTTATTGGGTTCTGCCAGAAGGGGTTAATTGAAAAAGCTGAATCAATGCTTAGAGACATTGTTGAGGAAGGGAAGACTCCAACTCCAAACAGTTGGAGTATTGTTGCAGCAGGCTATATTGAAAAGCAGAATATGGAGAAGGCCTTTGAGTGCATGAAGGAAGCCATAGCTGTGCTTGCAGAAAACAAAGGGTGGAGGCCCAAACCTAAAGTGATTTCAAGCATATTGAGCTGGCTTGGTGATAACAGAGATGTTGAAGAAGTAGAAACTTTTGTGAGCGCCTTGAAGGCAGTGATTCCAATGGATAGGGAAATGTATCATGCACAGATTAGAGCAAGTATCAGAGCTGGGAAGGAAGTGGATGGAATTTTAGACAGCATGAAAGCTGATAAAATCGATGAAGATGAAGAAACAAGGAAGATCCTTAGCTTAAAGCACGACAAAGCCGAGTGA 1515 0.4343 MASSIFNRLKSNRHVSQTLISNVCSVRSVYTGRFANINLYSRISPLGTPNLSLVPVLDQWVEEGKKVRDVELHRIIRDLRSRKRYAQALEVSEWMSSKELCPFSPSARAVQLDLIGQVRGLESAENYFNNMSAEEKIDKMYGALLNCYVRERVIDKSLSHLQKMKELGFASTPLPYNGLMCLYINTDQLEKIPDVLSEMQENGISPDNFSYRLCINSYGARSDLNSMEKILEEMESKSHIHIDWMTYSMVANFYIKAGLNEKALFFLKKAETKLHKDPLGYNHLISLYASLGSKAEMMRLWERRKTASKKLINRDYITMLGSLVKLGELEDTEALLKEWESSGNCYDFRVPNTLLIGFCQKGLIEKAESMLRDIVEEGKTPTPNSWSIVAAGYIEKQNMEKAFECMKEAIAVLAENKGWRPKPKVISSILSWLGDNRDVEEVETFVSALKAVIPMDREMYHAQIRASIRAGKEVDGILDSMKADKIDEDEETRKILSLKHDKAE* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0284 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Vvi19g0284 504 FunFam Pentatricopeptide repeat-containing protein 193 309 - -
Vvi19g0284 504 Pfam Pentatricopeptide repeat domain 161 220 IPR002885 -
Vvi19g0284 504 FunFam Pentatricopeptide repeat-containing protein At4g21705, mitochondrial 310 413 - -
Vvi19g0284 504 Gene3D Tetratricopeptide repeat domain 50 183 IPR011990 GO:0005515
Vvi19g0284 504 SUPERFAMILY TPR-like 250 416 IPR011990 GO:0005515
Vvi19g0284 504 Pfam PPR repeat 352 378 IPR002885 -
Vvi19g0284 504 Pfam PPR repeat 316 343 IPR002885 -
Vvi19g0284 504 NCBIfam pentatricopeptide repeat 352 382 IPR002885 -
Vvi19g0284 504 NCBIfam pentatricopeptide repeat 176 207 IPR002885 -
Vvi19g0284 504 PANTHER OS12G0527900 PROTEIN 36 488 - -
Vvi19g0284 504 FunFam Pentatricopeptide repeat-containing protein 50 192 - -
Vvi19g0284 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Vvi19g0284 504 Gene3D Tetratricopeptide repeat domain 187 312 IPR011990 GO:0005515
Vvi19g0284 504 Gene3D Tetratricopeptide repeat domain 313 417 IPR011990 GO:0005515
Vvi19g0284 504 Coils Coil 396 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0284 Vvi-Chr19 3022784 3025665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0284 15 464 EF-hand Containing Proteins AT1G02150 33.045 6.45e-87 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0284 - - vvi:100265843 1001.5