Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0281 ATGGCTACTGTTCTCGATTCCCTCGCCGTTCCTCGTTCCTCTGCTCTTCCTTCCTCTGCTTTCGCTCCGATTGCCTCCTCGCCAGTCTGCTTTCTCTCCGGCCGTCGGGGATTGGCGAGGTTGCCGGAGTTCTCAGGTTTGAAGATCCAGCCGAGTCTCGCCTCTCGTTCTGTGGCTGCGGCGGGTCGGAGTTCGAGAGTAGGTCGCCGTGTTGGAGGAGTCGTGTGCGAGGCTCAGGAGACTGCTGTTGAAGTACCTGCTGTGATTGATGCAACCTGGCAGTCACTTGTTCTTGATGCTGACACCCCCGTTCTGGTTGAATTCTGGGCTCCATGGTGCGGTCCCTGCCGCATGATCCACCCGGTAATCAATGAACTGGCAAAGCAATACACTGGGAAGCTCAAATGCTACAAAGTGAACACTGATGAGAGCCCTTCTATTGCAACACGGTACGGGATCAGAAGCATACCAACTGTCATCATCTTCAAGAGCGGCGAGAAGAAAGAAGCAATTATTGGTGCTGTTCCCAAATCCACATTGACCACCAGCATCGAGAAATTCTTATAG 567 0.5344 MATVLDSLAVPRSSALPSSAFAPIASSPVCFLSGRRGLARLPEFSGLKIQPSLASRSVAAAGRSSRVGRRVGGVVCEAQETAVEVPAVIDATWQSLVLDADTPVLVEFWAPWCGPCRMIHPVINELAKQYTGKLKCYKVNTDESPSIATRYGIRSIPTVIIFKSGEKKEAIIGAVPKSTLTTSIEKFL* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0281 188 PANTHER GEO12009P1 80 188 - -
Vvi19g0281 188 CDD TRX_family 91 185 - -
Vvi19g0281 188 ProSiteProfiles Thioredoxin domain profile. 65 188 IPR013766 -
Vvi19g0281 188 SUPERFAMILY Thioredoxin-like 78 188 IPR036249 -
Vvi19g0281 188 ProSitePatterns Thioredoxin family active site. 105 123 IPR017937 -
Vvi19g0281 188 PRINTS Thioredoxin family signature 104 112 - -
Vvi19g0281 188 PRINTS Thioredoxin family signature 112 121 - -
Vvi19g0281 188 PRINTS Thioredoxin family signature 152 163 - -
Vvi19g0281 188 NCBIfam thioredoxin 91 187 IPR005746 GO:0015035
Vvi19g0281 188 Gene3D Glutaredoxin 85 188 - -
Vvi19g0281 188 FunFam Thioredoxin 79 188 - -
Vvi19g0281 188 Pfam Thioredoxin 87 185 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0281 Vvi-Chr19 2987973 3003608 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0281 K03671 - vvi:100245250 333.954