Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0266 ATGGAGTCGCCGCCGTTTGGCCGATACACGCCTAAATCGAAAAAGCGAGTCTTCGTTGGTAGCAGTTCATCTGTAATGGACCCGGAGGTGGTAGAAATTAAGCTTCCGGCTTTGATTTCTCAGTCATCTGACTCTAAGAAGCTCAAGCAGAAAGAGGTTAATCACCATGAAATAATTGATATCGATATTGATGAAGATTCTTCTGATCTTATGATCATTGATGAGAAAGTTGATAGAAATAAAGGCAAGGCAATAAAAAATGTTTCTGATGGTTATTTCAACTACCAAGCCAAGGATGCGGTCACAAATAATCATGCCAGTCCTACTACTGCAGTAAACCTTGAATCATTAGATGGATTTCCATCTTCCAAGAGCTTTGCCCCAGGAGTACATAGTTCCATCAATATAGATGGTTTTGTGTCTGATTTATCTTATGATGATGATGATAATACTGATATTTATTCTGATGATTTTATGGATGATGATGAGTATGCAATATTGCAAGCCCATTTTGATAATGTGGATATTCCTCCTGGCGTAGAGGCACCTATTCCCTGGCTGCCAGTTTCTGCCCGAAGTAAGAAGAAGTCATCATCTACTGCAAATATTTCATCCTATGTAAATAAGCAAACCCAACCAATTGATCTGTCTCTAAATCAGTGGTTTCCTGAACCTGCCCAGTTTAAAGCAGGACCAACTTCAGTTAATGGTACAAGCTCACAAATCCAAGTAGATGCTGTGAGTCAGCTACCTAAGTTGGAATCGTCTTCATCCTGGTTATATCCAGAAGCTGGCCAAATTAAAAAGAAGCCAAATCCTTTTGCTGCCTCAACTTATTCAAGTTCACTAACCCAAATGGGTACTGCAAATCATTCTACTGGGTTAGAACAGTCTACAGCTTTGCAGTTTTTGGGACCTACACAAAGAAAAAAGATGCCAACTTCTGCAAATGGTTCTCATAATTCTGAAACTCAGTTGGATAACTTGGATGCAGTGAATTTCCTTCCTGAATGGACAACATGGGGATCTCCTTCTCCTGTTGGTGTCGGTATGAAGAAACCAGCTAGTAAGAGTAGTTCAAGTCATTCTAGTTTCCATGCACAGACGGGCTCTCTGAAAATGCTTCCTGGAGCAGAGCAATTTCCATATTGGTGGCCATCTCCTCCCATCTCTTCCATATCGAACAAGGAGCCATCTTTTATGGGCGATCCAGCTTTTTTCAATTTTTATGATCCATTTGATCCTGCACATATCGTTCCTGAGGAAGACGCAGATTACTCTTTGGTTCTGGATCATGCAGGAAGTCCAAAGAATGCAAATGCAACTGCTGCAGGAAGTTCAGCAATCTCTTCTGAAACAATCCCAAACAGGGGAAAGGGCAGGAACAAGGATGATATTCTCAATAAGTTTCGACTTTTCAAACAATTTGACACTGTCCAAGATCATTCGGACCATCATTATTCTTGCAATGGTTCTTCACATACACAGCCATCAAAGAATTGGGCAAAGAAAATTCAGGAGGAGTGGAAGATCCTGGAGAAAGATTTGCCAGATACAATATCTGTGAGGGTTTATGAAACACGAATAGATCTTTTGAGGGCAGTGATTGTCGGAGCAGAGGGCACTCCCTACCATGATGGTCTCTTCTTCTTTGATGTTTTCTTTCCTGTTGACTATCCTAATGCGCCACCGCTTGTCCATTACCGTTCTGGTGGCCTTCGACTCAACCCAAATCTGTATGATAATGGGAAAGTATGCCTGAGCCTTCTAAATACTTGGTCTGGTGACCAGAATGAGAAGTGGATTCCTGGTTTATCGACCATGCTGCAGGTTCTGGTCTCAATACAAGGGTTGATTTTGAATGCAAAGCCCTTTTTCAATGAGCCTGGTTTTGCATGTATGAGTGGTTCAGCCAGTGGTGAGAAGCGGTCCCTGCAATATAATGAGAACACATTTATCCTATCATTGAAGACAATGTTATATTCGATGAAGAAGCCACCAAGGCATTTTGAGGACTTCGTTTTGGGGCATTTCTGCAAGCATGCTCACGACATCTTAGTGGCATGCAAAGCCTATATGGATGGTGCCCAAGTGGGTTGTCTCGTCAAAGGTGGGGTTCAAGATGTCGATGAGGGTGACAAGAGCTGCTCCAAGAGGTTCAAGGACAATCTGGCTGTGTTCAACAACTTGCTTGTGAAAACCTTCACAAATATTGGAGCTACTGGCTGTGAAAAATTCCTAACCAAGGAACCTGAGAAACCCCCTCCTCCAGAAAGATTAAACAGACGAGCGGGCAAGTCACTTAAGGGAGTAATTATCGCCTCTTGA 2328 0.4227 MESPPFGRYTPKSKKRVFVGSSSSVMDPEVVEIKLPALISQSSDSKKLKQKEVNHHEIIDIDIDEDSSDLMIIDEKVDRNKGKAIKNVSDGYFNYQAKDAVTNNHASPTTAVNLESLDGFPSSKSFAPGVHSSINIDGFVSDLSYDDDDNTDIYSDDFMDDDEYAILQAHFDNVDIPPGVEAPIPWLPVSARSKKKSSSTANISSYVNKQTQPIDLSLNQWFPEPAQFKAGPTSVNGTSSQIQVDAVSQLPKLESSSSWLYPEAGQIKKKPNPFAASTYSSSLTQMGTANHSTGLEQSTALQFLGPTQRKKMPTSANGSHNSETQLDNLDAVNFLPEWTTWGSPSPVGVGMKKPASKSSSSHSSFHAQTGSLKMLPGAEQFPYWWPSPPISSISNKEPSFMGDPAFFNFYDPFDPAHIVPEEDADYSLVLDHAGSPKNANATAAGSSAISSETIPNRGKGRNKDDILNKFRLFKQFDTVQDHSDHHYSCNGSSHTQPSKNWAKKIQEEWKILEKDLPDTISVRVYETRIDLLRAVIVGAEGTPYHDGLFFFDVFFPVDYPNAPPLVHYRSGGLRLNPNLYDNGKVCLSLLNTWSGDQNEKWIPGLSTMLQVLVSIQGLILNAKPFFNEPGFACMSGSASGEKRSLQYNENTFILSLKTMLYSMKKPPRHFEDFVLGHFCKHAHDILVACKAYMDGAQVGCLVKGGVQDVDEGDKSCSKRFKDNLAVFNNLLVKTFTNIGATGCEKFLTKEPEKPPPPERLNRRAGKSLKGVIIAS* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0266 775 MobiDBLite consensus disorder prediction 437 462 - -
Vvi19g0266 775 CDD UBCc 503 650 IPR000608 -
Vvi19g0266 775 MobiDBLite consensus disorder prediction 304 325 - -
Vvi19g0266 775 Pfam Ubiquitin-conjugating enzyme 505 629 IPR000608 -
Vvi19g0266 775 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 500 660 IPR000608 -
Vvi19g0266 775 MobiDBLite consensus disorder prediction 747 766 - -
Vvi19g0266 775 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 262 740 - -
Vvi19g0266 775 FunFam Probable ubiquitin-conjugating enzyme E2 23 463 739 - -
Vvi19g0266 775 Gene3D Ubiquitin Conjugating Enzyme 463 737 IPR016135 -
Vvi19g0266 775 MobiDBLite consensus disorder prediction 354 368 - -
Vvi19g0266 775 MobiDBLite consensus disorder prediction 439 456 - -
Vvi19g0266 775 SMART ubc_7 503 660 - -
Vvi19g0266 775 MobiDBLite consensus disorder prediction 747 765 - -
Vvi19g0266 775 MobiDBLite consensus disorder prediction 345 368 - -
Vvi19g0266 775 SUPERFAMILY UBC-like 485 669 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0266 Vvi-Chr19 2820461 2829989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0266 359 740 Miscellaneous Gene Families AT2G33770 42.145 1.74e-87 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0266 K10581 - vvi:100262286 1456.04