Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0254 ATGATGGGGTCCTTCAATATGGAGAAGAAATGGGCATTTCCTCTGGCTATAAGCTCTCTCATATGCATGTTCCTTCTTGCTACCTCCTTCAACATGGGTCTTCTTTCTTCACTACACCCAATCAACTCAATCTTCTCGATTTTCTCGCCTGGCCTTTCTACAAACCAGACAAATCCTGTGTTTGCTGAACAGAAGGTTGGGCAACCCCCTCCACCACCTACCACTCCCAACATTCCCCGGTTTGCTTATTTAATTTCTGGTTCAAGGGGGGATTTGGAGAAGCTTTGGAGAACTCTTCAAGTACTTTATCATCCATTGAACCAATATGTTGTTCATTTGGACCTTGAATCGCCTGCAGAGGAACGATTGGATCTAGCTGCTAGAGTGGAGAAGGATCCGATTTTTTCTAAGGTTGGGAATGTTCACATGATTACAAAGGCAAACATGGTAACTTATAGAGGACCTACTATGGTTGCTAATACTCTTCATGCCTGTGCCATTCTTCTTAAGAGAAGTAAGAATTGGGATTGGTTTATCAACCTCAGTGCCTCAGATTATCCTCTCGTGACTCAAGATGATCTTCTTTACACATTTTTGGGTTTGGACCGGAACCTGAATTTCATCGAGCACACCAGTCGGCTAGGTTGGAAAGAGAATCAAAGAGCAATGCCTTTGATTGTAGACCCCGGGCTCCACATGACAACAAAGTCGGAGATATTCTGGGTCTCACCTAGGAGAACTTTGCCAACGGCTTTTAAACTATTCACCGGTTCAGCATGGATGGTTCTCTCACGATCGTTTGTAGAATACTGCATATGGGGTTGGGATAACCTCCCTCGAACCCTTCTCATGTACTACGCAAATTTTGTGTCCTCCCCAGAAGGCTACTTTCAGACTGTGATATGCAATGCACCAGAGTATGCCAAGACCACTGTAAACCACGATTTGCACTTCATTTCTTGGGACAATCCTCCAAAACAGCACCCCCACACCCTCACCATCAACGACACCAGTAGGATGATCGGAAGCAATGCAGCCTTCGCCCGGAAATTCAGACAAGATGACCCTTCCTTGGATAAGATTGATAAAGATTTACTAGGCAGGAAGAAAGGCGGCTTCACCCCTGGTGGCTGGTGCTCCGGCAACCCCCCTTGTTCCAAGGTTGGTGATCCTACCAAGCTAAAACCAGGTCCTGGAGCTCAAAGGCTTCGCCTTCTCGTATCTAGATTACTTCTATCAGCTAGGTATGGTCAAAATCAGTGTAAATAG 1269 0.4563 MMGSFNMEKKWAFPLAISSLICMFLLATSFNMGLLSSLHPINSIFSIFSPGLSTNQTNPVFAEQKVGQPPPPPTTPNIPRFAYLISGSRGDLEKLWRTLQVLYHPLNQYVVHLDLESPAEERLDLAARVEKDPIFSKVGNVHMITKANMVTYRGPTMVANTLHACAILLKRSKNWDWFINLSASDYPLVTQDDLLYTFLGLDRNLNFIEHTSRLGWKENQRAMPLIVDPGLHMTTKSEIFWVSPRRTLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYANFVSSPEGYFQTVICNAPEYAKTTVNHDLHFISWDNPPKQHPHTLTINDTSRMIGSNAAFARKFRQDDPSLDKIDKDLLGRKKGGFTPGGWCSGNPPCSKVGDPTKLKPGPGAQRLRLLVSRLLLSARYGQNQCK* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0254 422 Pfam Core-2/I-Branching enzyme 81 340 IPR003406 GO:0016020|GO:0016757
Vvi19g0254 422 PANTHER GLYCOSYLTRANSFERASE 7 421 IPR044610 GO:0015020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0254 Vvi-Chr19 2717902 2720199 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0254 2 422 Glycosyltransferase AT4G27480 74.704 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0254 - - vvi:100245224 860.907