Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0250 ATGCCTGCCATGGCTGCCACCGGCTTCACAACCCCTTCTGTTCTAAGAAAAGCGCTTCACTCTTTTTTACCTCTTCGCCTCACTCACATCAACAACACGCTCTTCTACTATAAAAATCTTCGCTCTTTTCCTCTCTCAACCCATCTGAATTCTTCAGCTTCAGGGATGTGTCACTTGGCACAAGCTATGAAGGGGGATGCTAATTCTTTACTCAAAGGAGTAGCAGACAGAAGCACTATTGAAGCTGTGAAACATATTCTTGAAATGGCAAAACGAGCATCAGCAAGGAGAGAAGTTCTCCACACTGATTTTCTTACTCCACCAGTACTGAAGGAATCAATGATAGTGTTGGAAAAGCTAGCTGACATGAAAGCTGTTGCACAGGGAGGATACCCTCAGGCTGAGCGTTGCCGACTTTCAGTTGGACATTCAGAGGTATTGACAACTGCTCCAGATATAGTTGCAGCATTGCGTATCACAGGAAACTTTGGGTTTCAATCTTGTTCTCATGGTGACTTCCTTGGCGCAATTCTTGGTACAGGGATTGCTAGGGAAAAGCTTGGGGATATCATCCTGCAGGGAGAAAAAGGGGCTCAAGTCCTGATTGTTCCAGAACTTGTTGACTTCCTTGTATCATCCCTAGAGAAGGTTGGCAATGTTTCAGTCTCTTGTACAAAGATGCCGTTGCTTGCTCTTGAATATGAAGAGCCAAGGACTACAACATTCAAAACCATAGAACTATCACTAAGGGTTGATGCACTAGCTAGTGCAGGGTTCAAGCTTTCACGATCCAAACTAGTTGATTTGATCAGTAATGGGGATGTTCGTGTTAACTGGACCACCGTGACGAAAAACGGAACAACACTCAAGACTGGAGATGTTGTCTCAGTTAGTGGAAAGGGAAGACTAAAGATTGGAGAGATAAACTCGACAAAGAAGGGAAAGTACGCGGTTGAGCTCATTCGATTCCTATAA 975 0.4431 MPAMAATGFTTPSVLRKALHSFLPLRLTHINNTLFYYKNLRSFPLSTHLNSSASGMCHLAQAMKGDANSLLKGVADRSTIEAVKHILEMAKRASARREVLHTDFLTPPVLKESMIVLEKLADMKAVAQGGYPQAERCRLSVGHSEVLTTAPDIVAALRITGNFGFQSCSHGDFLGAILGTGIAREKLGDIILQGEKGAQVLIVPELVDFLVSSLEKVGNVSVSCTKMPLLALEYEEPRTTTFKTIELSLRVDALASAGFKLSRSKLVDLISNGDVRVNWTTVTKNGTTLKTGDVVSVSGKGRLKIGEINSTKKGKYAVELIRFL* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0250 324 CDD S4 250 304 - -
Vvi19g0250 324 ProSiteProfiles S4 RNA-binding domain profile. 249 309 - -
Vvi19g0250 324 Gene3D - 152 231 IPR012677 -
Vvi19g0250 324 SMART s4_6 249 309 IPR002942 GO:0003723
Vvi19g0250 324 PANTHER UNCHARACTERIZED 138 323 - -
Vvi19g0250 324 FunFam BnaA05g14690D protein 243 300 - -
Vvi19g0250 324 Gene3D - 249 301 IPR036986 GO:0003723
Vvi19g0250 324 SUPERFAMILY Alpha-L RNA-binding motif 128 312 - -
Vvi19g0250 324 Pfam Putative RNA-binding domain in YlmH 157 229 IPR040591 -
Vvi19g0250 324 Pfam S4 domain 253 295 IPR002942 GO:0003723
Vvi19g0250 324 NCBIfam photosystem II S4 domain protein 69 322 IPR017506 -
Vvi19g0250 324 Gene3D - 76 142 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0250 - - vvi:100248657 624.394