Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0238 ATGTGTCTTCCTCAAGCCTCAGGGAATCAATTCCCTCGTGGCTGCTTTCTCTCTCTACTTTCTCTTTCTAAACCCACGACCATGGCTGCAGCAGCCTTGAATGGTCTGAAAATGGCTGCTACATCGCAAGCGTATCTGGAGAGCATGCCTGTGAATGACACGAGAAAGCTACTATCGGACCTCTGCCGTCACTTCTACGGCCTTGGTTGGGTTTCAGGGACGGGTGGCAGCATCACAATCAAGGTCCATGATGAATCCATCCCTAAGCCTCAACAGCTCATTGTCATGTCCCCTTCCGGGGTTCAAAAGGAAAGGATGGTTCCAGAGGACATGTATGTGTTATCTCCAAGTGGGTGTTTCTTGTCTTCCCCATCTCCGAAGCCATACCCAAATAAGCCTCCCAAATGCAGTGATTGTGCTCCTCTTTTCATGAAGGCATATCTGATGCGCAATGCTGGAGCTGTCATCCACAGTCATGGGATGGAATCATGTATTGTGACAATGATTGATCCATTATCCAAAGAATTTCGAATCACTCATATGGAAATGATAAAAGGAATTCAAGGACATGGTTATTATGATGAGCTTGTGGTCCCAATCATAGAGAACACTGCCCACGAAAGGGAGCTCACAGATGCCCTTGCTGAAGCTATTGAAGCCTACCCGAAAACAACAGCTGTCCTTGTTCGCAACCATGGCATATATATATGGGGAGACTCATGGATTCATGCTAAAACTCAGGCTGAATGCTACCACTATCTCTTTGATGCTGCTATCAAACTTTACCAATTGGGCCTTGACTGGTCTACTCCAGATCATGGTCCAATTAAAAAATATGGTGGCAAAACAAATATGTCTGTGAAGGCAGGGACTGTAAATTCCAATCATGAGACTGAACCATCGCGACGTTGTATTGTTCTTGACATCGAAGGGACTACCACTCCTATATCATTTGTGACCGATGTTCTCTTTCCCTTTGCCCGCAATAATGTGAGTAGGCATTTGGCTGCAACGTATGAGACTGATGAAACTCAGGATGATATCAAGTTGTTGCGCACTCAGGTCCAGAGTGACTTGGAACAAGGTATTGTTGGTGCTGTGCCCATCCCACCAGATGATGCAGGGAAAGAGGAGGTGATTGCGGCTTTGGTTGCTAACGTGGAAGCAATGATAAAAGCCGACAGGAAGATCACAGCCTTAAAACAATTACAAGGTCATATTTGGCGAACTGGATTTCAGAATAATGAATTGGAGGGAGTCGTTTTTGAGGATGTGCCAGAAGCTCTTCAGAAGTGGCATGCTTCAGGAATAAAGGTGTACATATATTCTAGTGGTAGCAGGTTGGCTCAAAGGCTTCTATTTGGATACACAAACTATGGGGACCTAAGAAAATATTTATGTGGATTTTTCGACACTACAGTGGGGAATAAAAGAGAAACAAAGAGTTATGTTGAAATCACCGAGTCAGTGGGAGTTGATAAGCCATCGGAGATTTTGTTTGTGACAGATGTCTATCAAGAAGCTGTTGCTGCAAAGGCAGCAGGGTTGGAGGTGATAATCTCTATTCGACCAGGAAATGGACCTCTTCCAGATAATCACGGGTTCAAGACAATCACATCTTTTTCAGACATTTGA 1635 0.4465 MCLPQASGNQFPRGCFLSLLSLSKPTTMAAAALNGLKMAATSQAYLESMPVNDTRKLLSDLCRHFYGLGWVSGTGGSITIKVHDESIPKPQQLIVMSPSGVQKERMVPEDMYVLSPSGCFLSSPSPKPYPNKPPKCSDCAPLFMKAYLMRNAGAVIHSHGMESCIVTMIDPLSKEFRITHMEMIKGIQGHGYYDELVVPIIENTAHERELTDALAEAIEAYPKTTAVLVRNHGIYIWGDSWIHAKTQAECYHYLFDAAIKLYQLGLDWSTPDHGPIKKYGGKTNMSVKAGTVNSNHETEPSRRCIVLDIEGTTTPISFVTDVLFPFARNNVSRHLAATYETDETQDDIKLLRTQVQSDLEQGIVGAVPIPPDDAGKEEVIAALVANVEAMIKADRKITALKQLQGHIWRTGFQNNELEGVVFEDVPEALQKWHASGIKVYIYSSGSRLAQRLLFGYTNYGDLRKYLCGFFDTTVGNKRETKSYVEITESVGVDKPSEILFVTDVYQEAVAAKAAGLEVIISIRPGNGPLPDNHGFKTITSFSDI* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0238 544 Hamap Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1. 43 544 IPR027505 -
Vvi19g0238 544 Gene3D - 413 544 IPR023214 -
Vvi19g0238 544 SMART Aldolase_II_2 56 259 IPR001303 -
Vvi19g0238 544 Pfam haloacid dehalogenase-like hydrolase 304 515 - -
Vvi19g0238 544 Gene3D - 51 275 IPR036409 -
Vvi19g0238 544 SFLD enolase-phosphatase 303 543 IPR023943 GO:0000287|GO:0019509|GO:0043874
Vvi19g0238 544 Gene3D - 316 412 - -
Vvi19g0238 544 SUPERFAMILY HAD-like 303 544 IPR036412 -
Vvi19g0238 544 Hamap Enolase-phosphatase E1 [ENOPH1]. 303 544 IPR027511 GO:0019509
Vvi19g0238 544 PANTHER ENOLASE-PHOSPHATASE E1 287 544 - -
Vvi19g0238 544 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 51 276 - -
Vvi19g0238 544 NCBIfam HAD-IA family hydrolase 388 515 IPR006439 -
Vvi19g0238 544 Hamap Methylthioribulose-1-phosphate dehydratase [APIP]. 43 267 IPR027514 GO:0005737|GO:0019509|GO:0046872
Vvi19g0238 544 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 316 412 - -
Vvi19g0238 544 CDD HAD_EP 304 525 IPR023943 GO:0000287|GO:0019509|GO:0043874
Vvi19g0238 544 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 412 544 - -
Vvi19g0238 544 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 303 543 - -
Vvi19g0238 544 Hamap Enolase-phosphatase E1 [mtnC]. 301 544 IPR023943 GO:0000287|GO:0019509|GO:0043874
Vvi19g0238 544 Pfam Class II Aldolase and Adducin N-terminal domain 58 258 IPR001303 -
Vvi19g0238 544 SUPERFAMILY AraD/HMP-PK domain-like 53 273 IPR036409 -
Vvi19g0238 544 NCBIfam acireductone synthase 303 543 IPR023943 GO:0000287|GO:0019509|GO:0043874
Vvi19g0238 544 NCBIfam methylthioribulose 1-phosphate dehydratase 58 263 IPR017714 GO:0005737|GO:0019509|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0238 Vvi-Chr19 2576373 2588162 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0238 K16054 - vvi:100257258 1089.72