Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0235 ATGTCTGAGAATACTAGTTGTGCAGATGCTAGTCCTCTGCTAGAGGGTGTTGATGATGATCATGGAGGAGAAAGGAGGGACGGGAGGTGGTGGAAGAGAGTTTTGGATGTAGAGGAGGCCAAAAAGCAGCTCTTGTTTGGACTTCCAATGATCCTTTCCAATGTTTTTTACTATTCCATCACTCTGGTATCTGTCATGTTCGCTGGCCACCTGGGGGACCTTGAGCTTGCTGGCTCCAACCTTGCCAACTCATGGGCCACTGTCACTGGTTTGGCTTTCATGATTGGTCTGAGTGGTGCACTGGAGACACTATGTGGGCAAGGATATGGTGCGAAACTGTATAGAATGTTGGGGATTTATCTTCAAGCCTCTTGCCTCGTATCATTATTCTTCTCTATCTTTATATCCATTCTTTGGCTCTACACAGAACCAATCTTGATCTTACTTCACCAAGATTCACACATCTCAAAAGCAGCTGCCCTTTACATGAAGTATCTTGTGCCTGGAATCTTTGCATATGGCTTCCTGCAAAACATTTTGAGGTTTCTTCAGACACAGTCCATCGTGTTGCCTCTTGTCGTATGCTCACTGCTCCCATTAGTGATCCATGTTGGCTTTGCATATGTTCTGGTTCATTGGACAGTTCTTGGCTACAAGGGAGCAGCGCTGGCAGCTTCGGTTTCATTGTGGATATCAGTCCTGATGCTAGCCTTGTATATGAGTTATGCCAAGAAATTTGAGCATACATGGAAAGGATTTTCTTTCGAGTCATTCAGTTATATTCTAACAAACTTGAAATTGGCTCTTCCCTCTGCTGCAATGGTGTGTTTGGAGTTCTGGGCATTCGAGATTCTAGTGTTCTTAGCTGGACTGATGCCAAATTCAGAAACTACTACTTCATTAATCGCGATGTGTGTGAACACAGAAAATATAGCATACATGATTTCTTATGGCCTCAGTGCAGCAGCAAGCACAAGGGTGTCAAATGAGCTTGGAGCCTGCAATCCCAACCGGGCTAAGACCGCCATGGCTGTCACTCTCAAGCTTGCTCTCCTCCTTGCTGTGTTAGTTGTTGTAGTCCTAGCCCTTGGTCACAACATCTGGGCTAGCTTCTTCAGTGATAGCAGAGTCATAATAAAGGACTATGCCTCCATGGTGCCCCTGCTTGCAATCTCAATACTAATTGACTATGCACAAGGTGTCTTTTCAGGGGTGGCCAGAGGATGTGGCTGGCAGCACTTGGCTGTGTACATCAACTTAGCTACATTCTACTGCATTGGTGTGCCAATTGCCATCCTTCTTGGGTTTAAATTGGAGCTACATGTCAAGGGCTTGTGGATAGGCCTAATATGTGGTCTCTCATGCCAAGCTGGGAGTCTTATGTTGATCACACTGCACACCAAATGGACAAGAGTGGAGCTCTCTGTGAACCAAGAAAAAGAAAACCCCAAGCCGGTTAATTGA 1464 0.4556 MSENTSCADASPLLEGVDDDHGGERRDGRWWKRVLDVEEAKKQLLFGLPMILSNVFYYSITLVSVMFAGHLGDLELAGSNLANSWATVTGLAFMIGLSGALETLCGQGYGAKLYRMLGIYLQASCLVSLFFSIFISILWLYTEPILILLHQDSHISKAAALYMKYLVPGIFAYGFLQNILRFLQTQSIVLPLVVCSLLPLVIHVGFAYVLVHWTVLGYKGAALAASVSLWISVLMLALYMSYAKKFEHTWKGFSFESFSYILTNLKLALPSAAMVCLEFWAFEILVFLAGLMPNSETTTSLIAMCVNTENIAYMISYGLSAAASTRVSNELGACNPNRAKTAMAVTLKLALLLAVLVVVVLALGHNIWASFFSDSRVIIKDYASMVPLLAISILIDYAQGVFSGVARGCGWQHLAVYINLATFYCIGVPIAILLGFKLELHVKGLWIGLICGLSCQAGSLMLITLHTKWTRVELSVNQEKENPKPVN* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0235 487 PANTHER MULTIDRUG RESISTANCE PROTEIN 37 469 - -
Vvi19g0235 487 MobiDBLite consensus disorder prediction 1 25 - -
Vvi19g0235 487 Pfam MatE 270 432 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi19g0235 487 Pfam MatE 49 209 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi19g0235 487 CDD MATE_eukaryotic 39 473 IPR045069 GO:0042910|GO:1990961
Vvi19g0235 487 NCBIfam MATE family efflux transporter 49 446 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0235 Vvi-Chr19 2535102 2537063 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0235 K03327 - vvi:100241893 915.99