Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0234 ATGGGGATGTTTGAGAATGATAACAGTGGTTCAAGTACTGCTAGTCCTCTGTTGGAGGTTGTGGGTGGTGGTGATGGAGGAGAAAGGAGGGGTGGGAGGTGGTGGTGGTGGAAGAGAGTGCTGGATGTGGAGGAGGCCAAGAAGCAAGTCTTGTTTGGCCTCCCAATGATCCTCACCAATGTTTTCTACTACTCCATCACCTTGGTTTCAGTCATGTTCGCCGGCCACCTAGGTGAGCTCGAGCTCGCCGGCGCCACCCTCGCCAACTCATGGGCCACTGTCACTGGCATCGCATTTATGATTGGTCAAAGTGGTGCACTGGAGACCCTTTGTGGGCAAGGATATGGGGCAAAATTGTATAGGATGTTGGGAATCTATCTCCAAGCATCTTCCATCATTACAATATTCTTCTCCTTCATTATATCCATCATTTGGCTCTACACACAACCCATTCTGATCTTTCTTCATCAAAGCAGTGAGATCTCCATAGCAGCTGCTCTCTACATGAAGTATCTTGTGCCTGCAATCTTTGCATATGGCTTCCTGCAAAACATTCTGAGGTTTCTCCAGACACAGTCTGTTATCTGGCCCCTTGTAGTCTGCTCAGGCCTCCCTTTACTCATCCATTTTGGGATTGCATATGCTTTGGTTCATAGGACTACTCTTGGCTACAAGGGAGCCCCACTGGCAGCTTCCATTTCACTATGGCTTTCGACCATTATGCTCGCTGTTTATGTGAAGTATGCTAAGATATTTGGGGATACATGGAAAGGGTTTTCATCTGAATCATTCAGTCACATTCTCTCAAACTTGAAATTAGCACTGCCCTCTGCAGCAATGGTGTGTTTGGAGTACTGCGCATTTGAGATTCTGGTGTTGCTAGCTGGGTTGATGCCTAATTCAGAAACAAGCACTTCATTAATAGCAATGTGTGTGAACACAGAAGCTATAGCATACATGATTGCTTATGGTTTCAGTGCAGCAGCAAGCACAAGGGTATCAAATGAGCTGGGAGCAGGCAATCCGGACCGAGCCAAGCACGCTATGGCAGTGACTCTCAAGATCTCCATCTGTGTTGCTCTTGTAGTTGTTCTACTCCTAGCCCTTTGTCACAACATCTGGGCTAGCTTCTTCAGTGATAGCACTGTCATAATAAAGGATTTTGCTTACATGACACCCCTGCTTGTAGCCTCAATACTATTAGATAGTGCACAAGGTGTCCTTTCAGGGGTGGCAAGAGGATGTGGCTGGCAGCATATCGCCATGTACATCAACTTGGCTACGTTCTATCTGATCGGCATGCCCATCTCAGTGCTCCTCGCCTTTAAGTTGAAATTATATGCTAAGGGCTTGTGGATAGGACTGATCTGTGGCCTCTCATGCCAGGCTGCAAGTCTGTTGTTCATAACACTACGCACCAACTGGACAAGCATAAAGCTCTCTGTGAGCTGCGAAAAAGAAAATCCAGAGCTGATTAACTGA 1482 0.469 MGMFENDNSGSSTASPLLEVVGGGDGGERRGGRWWWWKRVLDVEEAKKQVLFGLPMILTNVFYYSITLVSVMFAGHLGELELAGATLANSWATVTGIAFMIGQSGALETLCGQGYGAKLYRMLGIYLQASSIITIFFSFIISIIWLYTQPILIFLHQSSEISIAAALYMKYLVPAIFAYGFLQNILRFLQTQSVIWPLVVCSGLPLLIHFGIAYALVHRTTLGYKGAPLAASISLWLSTIMLAVYVKYAKIFGDTWKGFSSESFSHILSNLKLALPSAAMVCLEYCAFEILVLLAGLMPNSETSTSLIAMCVNTEAIAYMIAYGFSAAASTRVSNELGAGNPDRAKHAMAVTLKISICVALVVVLLLALCHNIWASFFSDSTVIIKDFAYMTPLLVASILLDSAQGVLSGVARGCGWQHIAMYINLATFYLIGMPISVLLAFKLKLYAKGLWIGLICGLSCQAASLLFITLRTNWTSIKLSVSCEKENPELIN* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0234 493 PANTHER MULTIDRUG RESISTANCE PROTEIN 43 475 - -
Vvi19g0234 493 CDD MATE_eukaryotic 45 475 IPR045069 GO:0042910|GO:1990961
Vvi19g0234 493 MobiDBLite consensus disorder prediction 1 28 - -
Vvi19g0234 493 Pfam MatE 276 438 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi19g0234 493 Pfam MatE 55 214 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi19g0234 493 MobiDBLite consensus disorder prediction 1 16 - -
Vvi19g0234 493 NCBIfam MATE family efflux transporter 55 452 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0234 Vvi-Chr19 2532312 2534460 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0234 K03327 - vvi:100264179 905.975