Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0228 ATGGCAGAGGTCAGGAGCATCGGAGTGGTGGGCGGCGGTCAGATGGGTTCGGGAATCGCCCAACTCGCCGCCGTGCACGGCGTCGACGTTTGGCTTCACGACACCGACGCCGAGGCTCTTACCAGAGCCACCAAATCCATCTCCACTTCCATCCAACGTTTCGTCTCCAAAGGACAGCTCTCTCAGGAAGTAGCTACTGGTGCTCTGCAACGTCTACGATGTACCTCAAATTTGGAGGAACTTTGTTCTGCAGATGTTATAATTGAAGCAATCGTTGAATCTGAGGATGCCAAGAAAAAATTATTTTCTGAATTAGATAAGCTTGCAAAGGGTTCTGCCATTTTAGCATCTAATACAAGTTCTATTTCCATTACTCGTCTAGCTTTTGCAACTAGCAGACCATGCCAGGTTATTGGTATGCATTTTATGAATCCTCCTCCTATTATGAAACTGGTTGAGATTGTGAGAGGTGCAGATACATCAGAAGAAACTTTTAATTTGACAAAGGCCTTGGCAGAGAGGTTTGGCAAGACTGTGATATGCTCTCAGGATTATTCTGGGTTCATCATAAACCGGGTTCTAATGCCAATGATTAATGAAGCATTTTTCACACTCTATACTGGGGTGGCAACAAAGAAGGACATTGATACAGGAATGAAGCTGGGAACAAACCATCCAATGGGTCCTTTAGAGCTTGCAGATTTCATTGGTTTGGATGTCTGTTTGTCAATAATGAAAGTTCTTCATGCTGGCCTAGGGGACAGTAAATATGTTCCCTGTCCTCTTCTCCAGCAGTATGTTGATGCAGGTCGCCTTGGGAGAAAACGAGGAATTGGGGTTTACAACTATCGTAAAGTAACAGGAGCAACCAACCTATCATCTCGAATTTGA 891 0.4478 MAEVRSIGVVGGGQMGSGIAQLAAVHGVDVWLHDTDAEALTRATKSISTSIQRFVSKGQLSQEVATGALQRLRCTSNLEELCSADVIIEAIVESEDAKKKLFSELDKLAKGSAILASNTSSISITRLAFATSRPCQVIGMHFMNPPPIMKLVEIVRGADTSEETFNLTKALAERFGKTVICSQDYSGFIINRVLMPMINEAFFTLYTGVATKKDIDTGMKLGTNHPMGPLELADFIGLDVCLSIMKVLHAGLGDSKYVPCPLLQQYVDAGRLGRKRGIGVYNYRKVTGATNLSSRI* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0228 296 Gene3D - 2 189 - -
Vvi19g0228 296 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 185 IPR036291 -
Vvi19g0228 296 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 187 285 IPR008927 -
Vvi19g0228 296 Pfam 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 7 184 IPR006176 GO:0006631|GO:0070403
Vvi19g0228 296 Pfam 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 187 283 IPR006108 GO:0006631|GO:0016491|GO:0016616
Vvi19g0228 296 PIRSF HCDH 1 294 IPR022694 GO:0006631|GO:0016616|GO:0070403
Vvi19g0228 296 PANTHER 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN 1 286 - -
Vvi19g0228 296 ProSitePatterns 3-hydroxyacyl-CoA dehydrogenase signature. 184 209 IPR006180 GO:0006631|GO:0016491|GO:0016616
Vvi19g0228 296 FunFam Fatty oxidation complex, alpha subunit 4 189 - -
Vvi19g0228 296 Gene3D - 190 294 IPR013328 GO:0016491
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0228 62 296 Acyl Lipid Metabolism Gene Families AT3G15290 80.000 2.56e-142 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0228 K00074 - vvi:100246999 569.696