Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0215 ATGGCCGGTGCTGCAATTGGGGTTGCCCACTGCTTGGCTCTTCCTTCCAAATTCAGAATCCTTTCACTTAACGCTTCTTCCTCTTCTTCTTGTTCAGTTCCTTTCACTTCTCTGGGTTTCTCCTCTAATCTGTCACAAACTGTCTTCTCCAAAGGACGTTTGTCAATAAGCACAATCCGGGGGCCGACTCATCACTCCATTGTATGCGACGCTGCGCCGATGAGGAAAGCTGATTCAGCGGCAAAGAGAGTTCGCCAGGCTGAGAAAAGGCGCATCTACAACAAAGCCCGGAAATCGGAAATCAGAACCCGAATGAAGAAGGTTTTGGAAGAACTGGATGGGCTCAAGAAGAAACCTGATGCACAAGCTGAAGAAGTCCTTCCAATTGAGAAGCTGATTGCTGAAGCATACTCAGTTATTGACAAAGCTGTGAAAGTGGGTACACTACACAGGAACACTGGTGCACGCAGAAAATCACGTCTTGCTCGAAGAAAGAAAGCTGTTGAGATCCACCATGGCTGGTATACACCTGCTCCCCCGGTAACCACCTAA 552 0.4819 MAGAAIGVAHCLALPSKFRILSLNASSSSSCSVPFTSLGFSSNLSQTVFSKGRLSISTIRGPTHHSIVCDAAPMRKADSAAKRVRQAEKRRIYNKARKSEIRTRMKKVLEELDGLKKKPDAQAEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTGARRKSRLARRKKAVEIHHGWYTPAPPVTT* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0215 183 PANTHER 30S RIBOSOMAL PROTEIN S20 64 179 IPR002583 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vvi19g0215 183 FunFam 30S ribosomal protein S20, chloroplastic 77 183 - -
Vvi19g0215 183 SUPERFAMILY Ribosomal protein S20 78 179 IPR036510 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vvi19g0215 183 Pfam Ribosomal protein S20 78 164 IPR002583 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vvi19g0215 183 Gene3D Ribosomal protein S20 77 183 IPR036510 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vvi19g0215 183 Coils Coil 98 118 - -
Vvi19g0215 183 NCBIfam 30S ribosomal protein S20 75 164 IPR002583 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vvi19g0215 183 Hamap 30S ribosomal protein S20 [rpsT]. 74 167 IPR002583 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0215 K02968 - vvi:100265925 340.887