Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0214 ATGGCTGAGTTTTTGTTCCATTCCAAGAAGAATGAATTCCCACCTGATATAAAGTCTATGAATGTCATCCTCAATGGATGGTGTGTGCTTGGGAGTTTGCGTGAAGCCAAGAGGTTTTGGAATGATATAATCACATCTAAGTGCAAACCTGATAAGTTCACATACGGGATTTTCATAAATTCATTGACAAAGGCAGGGAAATTGAGTACTGCTGTGAAGCTGTTTCAAGCAATGTGGGAGAAGGGGTGCAATCCAGATGTGGCAATCTGCAATTGCATCATTGATGCATTGTGTTTCAAGAAGCGGATTCCCGAAGCTCTGGAAGTTTTGAGGGAGATGAATGAGCGAGATTGCCAGCCTGATGTCGCGACTTACAACTCGCTCATCAAGCATTTGTGCAAGATTCAGCGGTTTGAAAAGGTTTATGAGCTGTTGGATGACATGGAACAGAAGGGTTGTTTGCCAAATGCTAGAACTTATGGTTACTTGTTGAAGTCCACAAAGAAACCAGAGGAAGTTCCTGGGATTTTGGAGAGGATGGAGAGAAATGGATGCAGGATGAACAGTGATTGCTACAATTTAATTTTAAAGTTGTATATGGACTGGGGTTATGAATTAAAATTGAGGTCTACTTTGGATGAGATGGAGAGAAATGGGATGGGACCTGATCAGCGAACATATACTATTATGATTCATGGGCTTTATGACAAGGGAAGGATGGACGATGCCTTGAGTTATTTCAAGCAGATGACATTGATGGGAATGGTGCCAGAGCCAAGGACAACGTTGTTGGTGAATGCCATGAACATCAAGTTAAAGGAAAGAGAAGCTGAACCAGAGGGGAAGGGGGCGAGAAACAAGGCTGATTCCATAAGGCCTTCAACTAGAAGGGGGAAGAAGAAGAGGGCGTTTTAA 915 0.4273 MAEFLFHSKKNEFPPDIKSMNVILNGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKGCNPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQKGCLPNARTYGYLLKSTKKPEEVPGILERMERNGCRMNSDCYNLILKLYMDWGYELKLRSTLDEMERNGMGPDQRTYTIMIHGLYDKGRMDDALSYFKQMTLMGMVPEPRTTLLVNAMNIKLKEREAEPEGKGARNKADSIRPSTRRGKKKRAF* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0214 304 Gene3D Tetratricopeptide repeat domain 68 169 IPR011990 GO:0005515
Vvi19g0214 304 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 121 155 IPR002885 -
Vvi19g0214 304 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Vvi19g0214 304 MobiDBLite consensus disorder prediction 275 304 - -
Vvi19g0214 304 Gene3D Tetratricopeptide repeat domain 1 67 IPR011990 GO:0005515
Vvi19g0214 304 Gene3D Tetratricopeptide repeat domain 170 278 IPR011990 GO:0005515
Vvi19g0214 304 Pfam PPR repeat 219 251 IPR002885 -
Vvi19g0214 304 Pfam Pentatricopeptide repeat domain 167 199 IPR002885 -
Vvi19g0214 304 NCBIfam pentatricopeptide repeat 226 257 IPR002885 -
Vvi19g0214 304 NCBIfam pentatricopeptide repeat 53 87 IPR002885 -
Vvi19g0214 304 NCBIfam pentatricopeptide repeat 20 51 IPR002885 -
Vvi19g0214 304 NCBIfam pentatricopeptide repeat 124 157 IPR002885 -
Vvi19g0214 304 NCBIfam pentatricopeptide repeat 89 122 IPR002885 -
Vvi19g0214 304 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 16 50 IPR002885 -
Vvi19g0214 304 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 10 164 - -
Vvi19g0214 304 MobiDBLite consensus disorder prediction 275 293 - -
Vvi19g0214 304 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 51 85 IPR002885 -
Vvi19g0214 304 Pfam PPR repeat family 15 63 IPR002885 -
Vvi19g0214 304 Pfam PPR repeat family 85 134 IPR002885 -
Vvi19g0214 304 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 86 120 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0214 13 267 Glycosyltransferase AT1G05670 26.641 5.95e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0214 - - vvi:100252048 629.787