Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0213 ATGGAGGAGTACACCTTGGATGATCCCACCCTGCTTCTCCAAGCTGCCTCCGATTTCGGTCACCATCCCGGAGTTCACAGTGACGCTTCAGCGAAGGCCTTCCTGCACAGATTCCCTCTTCCAGTCATCATCAATGTTTTACAAACCAAAGCAGATGTGCCTGGTGTGGAAAGTACTCTAGTTGCTTGTCTTGAGAGGATATTTTGCACAAAACATGGAGCCTCTCTCATTCCACAATATATGCCTTTTGTACAAGTTGGTCTCAGGGCAGATTCTCAAGTGGTCAGATGTTTAGCTTGTAAAACAGTTTCTTGCCTACTTGAAAACTTTGGTGAGAATACTGTTCCTGCTGCACAGCTGATTGTTGAACATGATATATATCCACTTTTGCTTGATTGCCTCATTAATGGCAATGAACAAGTTGCAACTGCATCAATGGATGCAATTAAGAGTTTGGCTGGTTCTTTTGAAGGCATGGAAATCATCTTTCCAGCTAATGACAACGAAGCTACGCATCTCAGAAATTTGGCTGCCCGATGTTCATCACTGGGACGAGTTCGGGTTTTAGCTTTGGTGGTGAAGCTATTCTCTGTCTCCAGCTCTGTAGCGTCACTAATTCACAACTCTGATCTACTTAACTTACTGGAGGCAGAAGTCTGCAACACAGATGATACCCTTGTAACTTTAAGTGTTTTGGAGCTATTATATGAGTTGGCAGAAATTCAACATGGTACAGAGTTCTTACCGAGGACCACCCTTGTTCAACTACTCAGTTCTATAATCGGCAACACATCCATGGAATCAATTTTAAGATCAAGAGCGATGATGATAAGTGGCAGGCTTCTTTCCAAGGAGAATATTTTCAAGTTCATTGATGAATCTTGTGTTAAAACTGTTATTTCATTGATTGATGGAAGACTCAGGTCATTGGAAAGTCAAGATGCAGATGAATGTGAATCCGCACTTGAAACATTGGGTCAAATAGGTTCATCAATTCATGGAGCTGAATTGCTACTTTTAAGTTCACCACCTGCTGCTAGACATGTTATTGATGCTGCCTTTGATCGGCAAGGACGTGGTAGACATCTGGCTGCATTGCATGCTCTTGGAAACATATCTGGAGAAACTAGATCAGAAAACAAGATAATGCTGAACAATGATGCAGAAGAAAGCCTCCAGCACCTGATCTATGAATCAGCATCCAAGAGTCCAAAGCTGACTCCATCAGGTCTTTTTCTATCAGTTCTTCAACAGGATGCAGAAGTTCGTCTGGCGGGTTATAGAGTAATAACTGGCCTGGTGGCACGGCCATGGTGCCTGATGGAGATTTGCTCAAAACAAGAAATAGTAAACATAATTACTGGTGCACATTCTGAAACCACAAAAATAGGCATGGAAGCTAAATACAATTGTTGCAAGGCAATTCATTGGGTCTTCATGTCATCAAGTAAACTTACCAGTGATCCTGCTCTCACCGGAATAGCTGAAAAGTTGCAAGAAGCTGTTAGAAGGGGTCCTTATCTTGCAAGAAAGCTTCAGGAAGCTCAACCTGTAGTAATGACAGCTGACAGATTTTAG 1578 0.424 MEEYTLDDPTLLLQAASDFGHHPGVHSDASAKAFLHRFPLPVIINVLQTKADVPGVESTLVACLERIFCTKHGASLIPQYMPFVQVGLRADSQVVRCLACKTVSCLLENFGENTVPAAQLIVEHDIYPLLLDCLINGNEQVATASMDAIKSLAGSFEGMEIIFPANDNEATHLRNLAARCSSLGRVRVLALVVKLFSVSSSVASLIHNSDLLNLLEAEVCNTDDTLVTLSVLELLYELAEIQHGTEFLPRTTLVQLLSSIIGNTSMESILRSRAMMISGRLLSKENIFKFIDESCVKTVISLIDGRLRSLESQDADECESALETLGQIGSSIHGAELLLLSSPPAARHVIDAAFDRQGRGRHLAALHALGNISGETRSENKIMLNNDAEESLQHLIYESASKSPKLTPSGLFLSVLQQDAEVRLAGYRVITGLVARPWCLMEICSKQEIVNIITGAHSETTKIGMEAKYNCCKAIHWVFMSSSKLTSDPALTGIAEKLQEAVRRGPYLARKLQEAQPVVMTADRF* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0213 525 SUPERFAMILY ARM repeat 41 499 IPR016024 -
Vvi19g0213 525 Gene3D - 8 407 IPR011989 -
Vvi19g0213 525 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 5-RELATED 1 525 IPR019538 GO:0043248
Vvi19g0213 525 Pfam Proteasome non-ATPase 26S subunit 62 511 IPR019538 GO:0043248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0213 K06692 - vvi:100260719 998.423