Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0182 ATGGGAACTGAGAATCCTAATCGTCCAAGTTTCCCTGCAAGGCCTGCTGCTACACCCTTTGCAGCTGGTCCCCAGCCTACAATGCCTTTTCTATCATCTGGGCCTGTGGTGGGATCACAGGCCTCTGGATTTAGACCCACCCCATCATCTACTCCCCAGGCTGCAATGCCTTTCTTGTCATCTGGGCCTGTGGTTGGACCAGAGACCTCTGGTTTTAGACCTACTCCACCAGGTAGGTTCAGTGATCCATCCTTGCCTTCTGTGCCTTCAGCAAATGCCCCACCAACTCTGGGACCTTTCCAGCGTTTCACAACACCACAAAATCCTTCAACAGCTCAAGCACCTCCTGCACGCCCTCTTCCTGTAGGGCAACCTGTTTTTCCTCCACCAGTTCAACCTCCTGCAGGTCAAGTTCCACCAGTTTCTTTCCGTCCACAGTCTCAGCTACCTTCAGTGCCTATGGGATCTCCTCCACAAAGCATGAATAGTGCACCATTACGTGCAAATGCTCCTCAGCCACTACTAGATTCTTCATTTTCAGCTTCCAGACCACCGTTTCAGCCATCTTTTCTCCCACCAGAGTCAACTTATCCTGCAGCAAGAGCCAATTTACAGCCATCTTTTCCTGGTTATCCAAGCAAGCAGTCTAATGCAGTTCCACAAGCACCTGCTGTACAGTCTCCTTTTCTTACTCAACAAGGAGGTTATGCAGCAGCCCCACCAACATCTTCTCCCCCTTTTCTTGCTCAACCAGGAGGTTACATCCCACCTCCACCAGTTGCTGCACCATTAGGCCTGCATTCAAGGGAACAAATGCAACATCCAGGCACTGGACCTCCTATAGGAGCTGTCCAGGGCTTGATAGAAGATTTCAGCTCTCTTTCTGTTGGATCTGTTCCTGGATCAATTGATCTAGGGATTGATTCAAAAGCATTGCCAAGGCCATTGGAAGGTGACGTTGAACCAAATTCCTTTGCTGAGATGTATCCCATGAATTGTCATTCCAGATATCTACGGCTGACAACTTCTGGTATACCAAATTCCCAGTCATTGGTTTCAAGGTGGCATTTGCCTCTAGGAGCAGTTGTTTGTCCTCTTGCGGTGCCTCCTGATGGGGAGGAAGTGCCAATCGTCAATTTTGCTGCAACTGGCATTATTCGTTGTAGAAGATGTCGCACATATGTGAATCCGTATGTGACATTTACTGATGGTGGCAGAAAGTGGCGTTGCAACATCTGTTCTTTGCTCAATGATGTTTCTGGTGATTATTTCTCCCATTTGGATGCAATTGGCAGAAGAATTGATTTGGATCAACGTCCTGAGCTTATTAAGGGTAGTGTGGAATTTGTTGCTCCCACTGAATATATGGTTCGTCCTCCAATGCCACCACTATATTTTTTCCTCATTGACGTATCACTATCTGCGGTTAGGAGTGGTATGCTTGAGGTTGTAGCACAAACTATTAGATCTTGCTTGGATGAGCTACCTGGTTCCACCAGAACACAGATTGGTTTCATAACTTTTGACAGCACCATACATTTTTATAATATGAAGTCGTCGTTGACACAGCCTCAAATGATGGTAGTCTCAGATCTAGATGATATATTTGTTCCATTGCCAGATGATCTCCTTGTGAATTTGTCCGAATCAAGAAGTGTGGTGGAAACATTTCTAGATAGCTTGCCATCTATGTTTCAGGACAATGTCAACCTAGAATCTGCATTTGGTCCAGCTCTTAAGGCTGCTTTTATGGTTATGAGCCAACTTGGGGGTAAATTGTTGATTTTCCAGAATACACTGCCTTCTCTTGGTGTTGGCCGCCTGAAGCTGCGTGGTGATGACCTTCGTGTTTATGGAACTGATAAAGAACATGCATTGAGATTACCTGAAGATCCATTTTATAAGCAAATGGCTGCTGATCTTACTAAGTACCAGATAGCAGTGAATATATATGCTTTCAGTGACAAATACACAGATATAGCCTCCTTAGGAACCTTGGCAAAGTACACTGGTGGTCAGGTATACTACTACCCAAGCTTCTTATCAATCATTCACAAAGATAGGTTGAGACATGAGCTATCCAGGGACCTTACAAGGGAAACTGCCTGGGAAGCTGTCATGCGCATAAGATGTGGCAAAGGTGTGCGGTTTACATCTTATCATGGGAACTTCATGCTAAGATCCACTGATTTGTTAGCCCTTCCAGCTGTAGACTGTGATAAAGCCTTTGCAATGCAGTTATGTCTTGAAGAGACTTTACTAACAACTCAGACTGTATATTTCCAAGTTGCTCTGCTATACACTTCATCTTCTGGAGAAAGGCGAATCAGGGTACATACGGCAGCAGCACCAGTGGTTGCAGATCTGGGAGAGATGTACCGCCAGGCTGATACTGGTGCTGTAGTGTCTTTATTTTGTAGGCTAGCAATTGAGAAAACTTTGTCCCATAAGCTGGAAGATGCACGGAACTCCGTGCAACTAAGGCTTGTCAAGGCCTTCAAAGAATATCGAAATCTCTATGCTGTGCAGCATCGGTTGGGAGGCAGGATGATATATCCAGAATCTTTGAAGCTTTTGCCTTTGTATGCATTAGCACTCTGTAAATCAACACCTCTACGTGGAGGGTATGCTGATGCTCAGCTCGATGAACGCTGTGCAGCAGGTTATACTATGATGACGTTACCTGTTAAAAGATTATTGAAGCTTCTATATCCTAGCTTGATTCGGATTGATGAGTATCTTTTAAAGCCAACTGCTCAGGCAGATGAGTTGAAAAGGTTACCACTAGTTGCGGAGAGCTTAGATTCTAGAGGTCTATATATTTATGATGATGGTTTTCGCTTTGTTATTTGGTTTGGAAGAATGCTTTCACCTGAAATAGCTATGAATCTACTTGGGCAAGACTTTGCTGCTGATTTATCGAAGGTTAGTCTTTATGAGCATGACAATGAAATGTCAAGAAAGCTAATGGGCATACTTAAGAAATTTAGGGAGAGTGATCCTTCATATTATCAGCTATGCCATCTTGTAAGACAAGGTGAACAACCAAGAGAAGGTTTCTTTTTACTTGCAAATCTTGTTGAAGACCAGATTGGAGGTACCAATGGCTATGCTGATTGGATTTTGCAAATACACCGACAAGTACAGCAAAATGCGTGA 3159 0.4438 MGTENPNRPSFPARPAATPFAAGPQPTMPFLSSGPVVGSQASGFRPTPSSTPQAAMPFLSSGPVVGPETSGFRPTPPGRFSDPSLPSVPSANAPPTLGPFQRFTTPQNPSTAQAPPARPLPVGQPVFPPPVQPPAGQVPPVSFRPQSQLPSVPMGSPPQSMNSAPLRANAPQPLLDSSFSASRPPFQPSFLPPESTYPAARANLQPSFPGYPSKQSNAVPQAPAVQSPFLTQQGGYAAAPPTSSPPFLAQPGGYIPPPPVAAPLGLHSREQMQHPGTGPPIGAVQGLIEDFSSLSVGSVPGSIDLGIDSKALPRPLEGDVEPNSFAEMYPMNCHSRYLRLTTSGIPNSQSLVSRWHLPLGAVVCPLAVPPDGEEVPIVNFAATGIIRCRRCRTYVNPYVTFTDGGRKWRCNICSLLNDVSGDYFSHLDAIGRRIDLDQRPELIKGSVEFVAPTEYMVRPPMPPLYFFLIDVSLSAVRSGMLEVVAQTIRSCLDELPGSTRTQIGFITFDSTIHFYNMKSSLTQPQMMVVSDLDDIFVPLPDDLLVNLSESRSVVETFLDSLPSMFQDNVNLESAFGPALKAAFMVMSQLGGKLLIFQNTLPSLGVGRLKLRGDDLRVYGTDKEHALRLPEDPFYKQMAADLTKYQIAVNIYAFSDKYTDIASLGTLAKYTGGQVYYYPSFLSIIHKDRLRHELSRDLTRETAWEAVMRIRCGKGVRFTSYHGNFMLRSTDLLALPAVDCDKAFAMQLCLEETLLTTQTVYFQVALLYTSSSGERRIRVHTAAAPVVADLGEMYRQADTGAVVSLFCRLAIEKTLSHKLEDARNSVQLRLVKAFKEYRNLYAVQHRLGGRMIYPESLKLLPLYALALCKSTPLRGGYADAQLDERCAAGYTMMTLPVKRLLKLLYPSLIRIDEYLLKPTAQADELKRLPLVAESLDSRGLYIYDDGFRFVIWFGRMLSPEIAMNLLGQDFAADLSKVSLYEHDNEMSRKLMGILKKFRESDPSYYQLCHLVRQGEQPREGFFLLANLVEDQIGGTNGYADWILQIHRQVQQNA* 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0182 1052 Gene3D Sec23/Sec24 helical domain 786 1048 - -
Vvi19g0182 1052 SUPERFAMILY Helical domain of Sec23/24 797 904 IPR036175 GO:0006886|GO:0006888|GO:0030127
Vvi19g0182 1052 Gene3D von Willebrand factor, type A domain 462 699 IPR036465 -
Vvi19g0182 1052 MobiDBLite consensus disorder prediction 112 140 - -
Vvi19g0182 1052 Pfam Sec23/Sec24 helical domain 797 900 IPR006900 GO:0006886|GO:0006888|GO:0030127
Vvi19g0182 1052 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 924 1050 IPR036180 -
Vvi19g0182 1052 Gene3D Severin 905 1029 IPR029006 -
Vvi19g0182 1052 MobiDBLite consensus disorder prediction 97 111 - -
Vvi19g0182 1052 MobiDBLite consensus disorder prediction 1 221 - -
Vvi19g0182 1052 Gene3D - 333 785 - -
Vvi19g0182 1052 MobiDBLite consensus disorder prediction 233 254 - -
Vvi19g0182 1052 PANTHER SEC24-RELATED PROTEIN 109 1048 - -
Vvi19g0182 1052 MobiDBLite consensus disorder prediction 32 57 - -
Vvi19g0182 1052 SUPERFAMILY Zn-finger domain of Sec23/24 376 459 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vvi19g0182 1052 MobiDBLite consensus disorder prediction 141 185 - -
Vvi19g0182 1052 FunFam protein transport protein Sec24D isoform X1 462 699 - -
Vvi19g0182 1052 MobiDBLite consensus disorder prediction 79 93 - -
Vvi19g0182 1052 Pfam Sec23/Sec24 beta-sandwich domain 702 785 IPR012990 -
Vvi19g0182 1052 SUPERFAMILY beta-sandwich domain of Sec23/24 219 795 - -
Vvi19g0182 1052 Gene3D - 332 444 - -
Vvi19g0182 1052 Pfam Sec23/Sec24 trunk domain 460 696 IPR006896 GO:0006886|GO:0006888|GO:0030127
Vvi19g0182 1052 CDD Sec24-like 460 701 IPR041742 GO:0006886|GO:0006888|GO:0030127
Vvi19g0182 1052 Pfam Sec23/Sec24 zinc finger 385 423 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vvi19g0182 1052 SUPERFAMILY vWA-like 460 699 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0182 Vvi-Chr19 2082214 2094788 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0182 K14007 - vvi:100252042 2060.8