Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0179 ATGGGGAAACGGAAGTCTAGGGCTAAGCCCCCTCCTAAGAAGCGTATGGACAAGCTCGACACTGTTTTCAGCTGTCCCTTCTGCAATCATGGAACCAGTGTTGAATGTAGAATTGACATGAAGAACTTGATTGGTGAGGCTGTGTGCAGAATTTGCCAAGAAAGCTTTAGCATGACTGTCAATGCTTTATCTGAACCCATCGACGTATATTCTGAATGGATAGATGAATGCGAAAGGGTGAACACCCTTGATGAAGATGCTGCTAAAGATGAAGATTAG 279 0.4409 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAVCRICQESFSMTVNALSEPIDVYSEWIDECERVNTLDEDAAKDED* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0179 92 Gene3D - 16 82 IPR038567 -
Vvi19g0179 92 Pfam Transcription elongation factor Elf1 like 2 78 IPR007808 -
Vvi19g0179 92 SUPERFAMILY Zinc beta-ribbon 1 81 - -
Vvi19g0179 92 PANTHER UNCHARACTERIZED 1 90 IPR007808 -
Vvi19g0179 92 FunFam Transcription elongation factor 1 homolog 15 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0179 Vvi-Chr19 2062722 2064629 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0179 K25829 - vvi:100246889 189.119