Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0177 ATGGGGCAAAGAAATATGATGTGCACTGGTCAGATGATTGATTTGCAAATGGATGAACGGAACCAAGGACATCATGTTATCAGTGTAACAAATTTTCCACAGCCTAATATGCACAGCATGTTATCAGCTCCAGGGAATTCAAGTAATTTTGATGTACGTCATTTACCTGAGCATTATGATGGCTCTGCTATGTTCTATGGGATTGGGCAGTACAATGGTGTTCAGCATCATCATCCAGTCCCAAGTCTTGATATAGGTGTTGCTCCTGGATCCAACATTTATAATCCTTACTTGACCCCTTCATCTGGAAACCGAGGGTTCCCTGTTTCTATAAATCACGGACCATCTGATCAGTTGCCATCTTCCAGCAATCATGGAGTCATTGGAGTTTCTACAGATGAGTATGGGAGGGAAAATCACTTTATGGATGGTGTTAGAGGTGCATGCAAACGAAAGAATGCTGAAGGCATCCTGGGGAATTTTCAGTATATTAATGGCTTAGCGAGCTCTAGTTCTTCAGTTCCTCCTTTCAATACAAGGCATCTTGAATCCGGGGTTTCCATGATGGATTCTGCATCTTTTGCCCAGCCACAGTACAGAGGGAATAATGCTCCTTCAATCATGGAAGTAGGATCTCACAGAAGTGTGAGGAACAGATCAGGTGCTGTTGGACTGGATTCTGTTCTGGCACATAATCATAACCATTTGGTTCAAGGAAACTATATTGGCCATCCTTTTCAGCCTTCTGGCAATCCCTGGGTCGACCAACAATCAGGCAATAATGGTAGTGATGGGGGAACTTTGGCCTGGAATCATGGACCTGCTTTACCTTATTTGCATGGGAGCAATATCAGTGGAGGTTCTAGAGAGGCTGGGAATGTGGGTATACAGGGATATCATGATACATCTAGTGGCAGAAGTTCCACAAATTACCTTCAACCTCCTGTCCTTCACCGGCCCCATACTCTTCATTATCCACCACCACCACCACCACCTATGCAAGGAGCAAGAAGCCATTTCCACCCTCAAGTGGTGGCATCTTCGTATAGACTTCCCACAATTAGTTCACGTGGTCCTGTGCCTCCTCAGGTTGGTGTGGAGGCAGGGCCCAGGCATCCAGGACCTGTTCCACCAACTGGGATTAGGATATACCGATCTAATCGAGGGGGTGTCGCACCTGAGGCAACATCGAGACATCATAATCTTCCTTACTTGAGAATGCTCCCAGCAGAAGAAGTTGCCATACTAGATCTTTCAGCATTTTATGAAGTAGGGGATCTCATTGACCATCACAGAGATATGCGATTAGACATAGAAGATATGTCTTATGAGGTACCCACAGGAAGCTTGATTACTTAA 1359 0.4503 MGQRNMMCTGQMIDLQMDERNQGHHVISVTNFPQPNMHSMLSAPGNSSNFDVRHLPEHYDGSAMFYGIGQYNGVQHHHPVPSLDIGVAPGSNIYNPYLTPSSGNRGFPVSINHGPSDQLPSSSNHGVIGVSTDEYGRENHFMDGVRGACKRKNAEGILGNFQYINGLASSSSSVPPFNTRHLESGVSMMDSASFAQPQYRGNNAPSIMEVGSHRSVRNRSGAVGLDSVLAHNHNHLVQGNYIGHPFQPSGNPWVDQQSGNNGSDGGTLAWNHGPALPYLHGSNISGGSREAGNVGIQGYHDTSSGRSSTNYLQPPVLHRPHTLHYPPPPPPPMQGARSHFHPQVVASSYRLPTISSRGPVPPQVGVEAGPRHPGPVPPTGIRIYRSNRGGVAPEATSRHHNLPYLRMLPAEEVAILDLSAFYEVGDLIDHHRDMRLDIEDMSYEVPTGSLIT* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0177 452 MobiDBLite consensus disorder prediction 289 309 - -
Vvi19g0177 452 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 146 444 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0177 Vvi-Chr19 2039104 2041752 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0177 K19041 - vvi:100264059 907.131