Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0174 ATGGCTGCCTACAGAGCAGACGACGACTACGATTACCTCTTCAAAGTGGTGTTGATTGGAGACTCTGGCGTCGGAAAATCCAATCTCCTCTCCAGATTCACCCGCAATGAGTTCAGTCTCGAATCCAAATCCACTATCGGTGTTGAATTCGCCACCCGGAGTATTCGGGTGGATGACAAGATCGTCAAGGCTCAGATTTGGGACACTGCTGGCCAGGAGAGATACCGTGCAATCACCAGTGCATACTACCGAGGTGCTGTTGGTGCACTCCTTGTCTATGATGTCACCCGACATGTTACATTTGAGAATGTGGAGAGATGGTTAAAGGAGCTCCGGGATCATACTGACTCGCATATTGTGATAATGCTTGTTGGCAACAAGGGAGACTTGCGTCACTTGCGTGCAGTTTCCATTGATGATGCCAAGGCATTTGCTGAGAGAGAAAACACTTTCTTTATGGAGACATCTGCCCTTGAGTCCATGAATGTTGAGAATGCATTCACTGAAGTGCTCACTCAAATATATCAAGTGGTTAGCCGGAAAGCCCTTGATATTGGGGATGACCCTGCTGCTTTGCCTAAAGGGCAAACCATTAATGTTGGAACCAAGGATGATGTTTCAGCTGTAAAGAAAGCTGGTTGCTGCTCCTCCTAA 654 0.474 MAAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSHIVIMLVGNKGDLRHLRAVSIDDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYQVVSRKALDIGDDPAALPKGQTINVGTKDDVSAVKKAGCCSS* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0174 217 SMART ran_sub_2 19 214 - -
Vvi19g0174 217 SMART rho_sub_3 16 173 IPR001806 GO:0003924|GO:0005525
Vvi19g0174 217 FunFam ras-related protein RABA1f 6 215 - -
Vvi19g0174 217 ProSiteProfiles small GTPase Ras family profile. 2 217 IPR001806 GO:0003924|GO:0005525
Vvi19g0174 217 ProSiteProfiles small GTPase Rho family profile. 7 175 - -
Vvi19g0174 217 PANTHER DRAB11-RELATED 7 201 - -
Vvi19g0174 217 ProSiteProfiles small GTPase Rab1 family profile. 9 215 - -
Vvi19g0174 217 NCBIfam small GTP-binding protein domain 12 170 IPR005225 GO:0005525
Vvi19g0174 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 180 IPR027417 -
Vvi19g0174 217 SMART ras_sub_4 11 177 - -
Vvi19g0174 217 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Vvi19g0174 217 CDD Rab11_like 11 175 - -
Vvi19g0174 217 Gene3D - 6 215 IPR027417 -
Vvi19g0174 217 PRINTS Transforming protein P21 ras signature 14 35 - -
Vvi19g0174 217 PRINTS Transforming protein P21 ras signature 55 77 - -
Vvi19g0174 217 PRINTS Transforming protein P21 ras signature 117 130 - -
Vvi19g0174 217 PRINTS Transforming protein P21 ras signature 37 53 - -
Vvi19g0174 217 PRINTS Transforming protein P21 ras signature 152 174 - -
Vvi19g0174 217 SMART rab_sub_5 14 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0174 Vvi-Chr19 2014926 2018066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0174 15 167 EF-hand Containing Proteins AT5G27540 28.485 1.07e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0174 K07904 - vvi:104877501 425.246