Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0172 ATGGATGGTCAATCGGTCAGCAAAACAAACGACTCGGATCCTCCGTCGGATCTCCAGTACCAATTCGGCTTCGGTAACCATCTCTCATCTGAGGCGATCGCCGGAGCTCTCCCTCGCGGCCAGAACAACCCTCTCACCTGCCCCTTCGGCCTCTACGCTGAGCAGATCTCTGGCACCCCCTTCACCGCCCCTCGCAAGCAAAACCAGTTCAGTTGGCTTTATCGGATTAAACCATCAGTCACACACGAGCCATTTAAACCTCGAGTCCCCAGTCATGGGAAGCTTGTGAGTGAATTTAACCAGTCTAACAGTTCCACTAACCCAACTCAACTACGGTGGAAGCCTGTGGAGATTCCTGATTCCCCTACTGATTTTATTGATGGGTTATACACGGTTTGTGGCGCAGGCAGTTCATTCCTTCGGCATGGATATGCTATTCACATGTACACTGCCAACAAATCCATGGACAATTGTGCTTTCTGCAATGCTGATGGTGACTTCTTGATAGTCCCCCAGAAAGGAAGGCTGTCAATCACTACTGAATGTGGCAAATTGCAAGTGTCTCCTGGTGAAATTGTTGTTCTACCTCATGGATTCCGTTTCGTTGTTGATCTGCCAGACGGCCCATCACGCGGTTATGTTGCTGAGATTTTTGGTGCTCATTTTCAACTTCCCGATCTTGGCCCAATAGGTGCTAACGGTCTTGCTGCTTCAAGGGATTTTCTTGTTCCTGTAGCCTGGTACGAGGAGTGTTCCCGTCCAGGTTACACTATCGTACAAAAGTTTGGTGGTGAACTCTTTACTGCAAAACAAGATTTTTCTCCCTTCAATGTGGTTGCTTGGCATGGTAACTATGTGCCATATAAGTATGATCTAAGTAAGTTCTGCCCCGTCAATACCGTTTTGAAAGATCATGCTGATCCGTCTATAAACACAGTGCTGACAGCACCAACTGATAAACCTGGTGTGGCTTTGCTTGATTTTGTCATTTTTCCTCCTAGATGGTTGGTTGCCGAGCATACCTTCCGACCTCCTTATTACCACCGCAACTGTATGAGTGAATTTATGGGCCTGATTTATGGTGGATATGAGGCAAAAGCTGATGGCTTCCTTCCTGGTGGTGCTAGTCTGCACAGCTGCATGACTCCCCATGGTCCTGATACCAAGACTTTCGAGGCTACCGTTGCTCACGGGAAGGATGCAGGACCTTTCAGGATAACCAATACCATGGCTTTCATGTTTGAGTCATGTCTAATCCCTCGTATCTGCCCATGGGCTCTCGACTCTCCCTCGATCGATCATGATTATTACCAGTGTTGGGTCGGACTAAGATCTCATTTCTCGCGTGAAGAAGCCAGCGACGAAAGCCAAACAATCCAGAATGGGCACTAG 1392 0.482 MDGQSVSKTNDSDPPSDLQYQFGFGNHLSSEAIAGALPRGQNNPLTCPFGLYAEQISGTPFTAPRKQNQFSWLYRIKPSVTHEPFKPRVPSHGKLVSEFNQSNSSTNPTQLRWKPVEIPDSPTDFIDGLYTVCGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLIVPQKGRLSITTECGKLQVSPGEIVVLPHGFRFVVDLPDGPSRGYVAEIFGAHFQLPDLGPIGANGLAASRDFLVPVAWYEECSRPGYTIVQKFGGELFTAKQDFSPFNVVAWHGNYVPYKYDLSKFCPVNTVLKDHADPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGGYEAKADGFLPGGASLHSCMTPHGPDTKTFEATVAHGKDAGPFRITNTMAFMFESCLIPRICPWALDSPSIDHDYYQCWVGLRSHFSREEASDESQTIQNGH* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0172 463 CDD cupin_HGO_N 111 219 - -
Vvi19g0172 463 NCBIfam homogentisate 1,2-dioxygenase 18 447 IPR005708 GO:0004411|GO:0006559|GO:0006570
Vvi19g0172 463 Gene3D Jelly Rolls 281 418 IPR014710 -
Vvi19g0172 463 SUPERFAMILY RmlC-like cupins 17 450 IPR011051 -
Vvi19g0172 463 Pfam Homogentisate 1,2-dioxygenase N-terminal 19 292 IPR046452 -
Vvi19g0172 463 FunFam Homogentisate 1,2-dioxygenase 281 418 - -
Vvi19g0172 463 Pfam Homogentisate 1,2-dioxygenase C-terminal 293 447 IPR046451 -
Vvi19g0172 463 PANTHER HOMOGENTISATE 1,2-DIOXYGENASE 16 453 IPR005708 GO:0004411|GO:0006559|GO:0006570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0172 K00451 - vvi:100264043 984.556