LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi19g0167	ATGGCCACCACCGCTTCCGGCTCCGTCCTCCTTCTTCTGCTCCTCGCCGCCGGAGCTGCCGTCGACGGCAGAGTCATAAGCAACCGCACATTGTCCACCGACCTAGTCTCTGATGACTTCCACGACCACCGCAATGGCTCGCCTTATCTTCTTCTCAGGTCATTTTCCGCCGTTTCAGCCTCGGATTCATGTGACCAGACGTACGGATTCATGCCCTGCACAACGACAATAGTGGGTAACCTCTTCCTCATCGTGGTCTATGGTTACCTCATGTTCCTCGCCGCAACCTATCTTTCCTCCGGCAGTGAGCTCCTGCTTGAAATCTTGGGCCCTGGCCTGGTCGGTGGCCTCATCGTTCCCATACTCGGCGCTCTTCCCGATGCCATTCTTATCCTTGTATCTGGACTTTCTGGAAGTACAGAAACTGCACAGAGTCAGGTCTCTGTAGGAATGGGGTTGCTTGCTGGATCAACTGTAATACTCCTTACAATAATGTGGGGATCTTGTGTTATTGTTGGCAAGTGTGACCTTCAGGATTCAGTTGCCAAAGACTTGCAAGATACCAAAGGATTTAGCCTAACCGGTTCTGGTGTTAGTACCGATATCTGGACTAGTTACGCTGCAATCATCATGGTGATATCAGTCATCCCATTTATCATTGTCCAACTACCTCAAGTTCTACATTCAACTTCAGCAAGACGCTTAGCAGTCTTGATTGCGCTTATTGTCTCCCTTATATTATTGATTACTTATTGCTTGTACCAGGTTTTTCAGCCTTGGATACAAAAGAGACGACTTGCTTATGCAAAGCATAAACATGTAATATCTGGACTTCTTAAACATTTAAGAATGCACACACTAGGAAAGCTCCTAACAGAGGAGGGTGAACCTAATGAAGAAATTATAAGAAAGCTTTTTCATTCAATTGATGAGAATCACGATGGGAACCTTTCAAAAGCCGAATTAAGACCATTGATTGTAGGAATTCAGTTTGAGGAGATAGACTTGGATAGGAATGAGGCTGTGGACAAAGTGATGAGTGATTTCGATACATCCAATGATCAGTTTGTTGATGAGGGAGAGTTTGTCAAAGGAATTTCAAGATGGATTACGGAAGCAAAGCGTTATGAGGGTTCTGGTCCTGATGCTGGTCCTAATTCATCAAGTATTTTAGATGCTTTTCACAGGGGAACAAAGAGAGAGCACAATCGTTTGGAGGGGTATCAAAGTGATGAGGTGGTTGAGGCTGTGGAAAACCCGAAGTGGATTACCTTTAAAGCAGTGATGATGTTGTTGTTGGGAACTCTTATTGCAGCTGTATTTGCTGATCCCCTTGTAGATGCTGTTGACAACTTCTCTGATGCTACGAGCATTCCTACCTTCTTCATCTCATTTATTGCACTGCCCTTGGCTACCTCCAGTGAGGCAGTTTCAGCAATTATCTTTGCTAGCCGCAAAAAGAGAAGGACTACGTCTTTGACATTTTCAGTGTTATATGGGGCGGTAACAATGAATAATGTCCTTTGCCTGTCAGTCTTTTTAGCCCTCGTTTATGTTAGGGGATTAACATGGGACTTCTCATCAGAGGTGCTGGTCATTCTCATAGTTTGCGTTGTGATGGGCGTTTTTGCCAGTTTCCGCACCACCTTCCCTCTCTGGACATCTTTTGTAGCTCTCTTGCTATACCCTTTCTCCCTGGCACTGGTTTATGTTTTGGACTATGTCCTTGGCTGGTCATAG	1740	0.4534	MATTASGSVLLLLLLAAGAAVDGRVISNRTLSTDLVSDDFHDHRNGSPYLLLRSFSAVSASDSCDQTYGFMPCTTTIVGNLFLIVVYGYLMFLAATYLSSGSELLLEILGPGLVGGLIVPILGALPDAILILVSGLSGSTETAQSQVSVGMGLLAGSTVILLTIMWGSCVIVGKCDLQDSVAKDLQDTKGFSLTGSGVSTDIWTSYAAIIMVISVIPFIIVQLPQVLHSTSARRLAVLIALIVSLILLITYCLYQVFQPWIQKRRLAYAKHKHVISGLLKHLRMHTLGKLLTEEGEPNEEIIRKLFHSIDENHDGNLSKAELRPLIVGIQFEEIDLDRNEAVDKVMSDFDTSNDQFVDEGEFVKGISRWITEAKRYEGSGPDAGPNSSSILDAFHRGTKREHNRLEGYQSDEVVEAVENPKWITFKAVMMLLLGTLIAAVFADPLVDAVDNFSDATSIPTFFISFIALPLATSSEAVSAIIFASRKKRRTTSLTFSVLYGAVTMNNVLCLSVFLALVYVRGLTWDFSSEVLVILIVCVVMGVFASFRTTFPLWTSFVALLLYPFSLALVYVLDYVLGWS*	580

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi19g0167	579	ProSiteProfiles	EF-hand calcium-binding domain profile.	297	332	IPR002048	GO:0005509
	Vvi19g0167	579	CDD	EFh	302	367	IPR002048	GO:0005509
	Vvi19g0167	579	FunFam	Sodium/calcium exchanger family protein / calcium-binding EF hand family protein	274	396	-	-
	Vvi19g0167	579	ProSiteProfiles	EF-hand calcium-binding domain profile.	337	372	IPR002048	GO:0005509
	Vvi19g0167	579	ProSitePatterns	EF-hand calcium-binding domain.	310	322	IPR018247	-
	Vvi19g0167	579	PANTHER	VACUOLAR CALCIUM ION TRANSPORTER	51	571	IPR004713	GO:0006812\|GO:0008324\|GO:0016020
	Vvi19g0167	579	SUPERFAMILY	EF-hand	296	371	IPR011992	-
	Vvi19g0167	579	SMART	efh_1	301	329	IPR002048	GO:0005509
	Vvi19g0167	579	SMART	efh_1	341	369	IPR002048	GO:0005509
	Vvi19g0167	579	Pfam	EF-hand domain pair	302	365	IPR002048	GO:0005509
	Vvi19g0167	579	Pfam	Sodium/calcium exchanger protein	82	258	IPR004837	GO:0016020\|GO:0055085
	Vvi19g0167	579	Pfam	Sodium/calcium exchanger protein	427	570	IPR004837	GO:0016020\|GO:0055085
	Vvi19g0167	579	ProSitePatterns	EF-hand calcium-binding domain.	350	362	IPR018247	-
	Vvi19g0167	579	Gene3D	-	232	378	-	-
	Vvi19g0167	579	FunFam	Sodium/calcium exchanger NCL2	416	572	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi19g0167	Vvi-Chr19	1883059	1897512	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi19g0167	24	579	EF-hand Containing Proteins	AT1G53210	67.199	0.0	743

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi19g0167	-		-	vvi:100252144	1069.3