Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0165 ATGTGGAAAATTCCAAAAAATAGAACATTCTCTATTTTTCTTATTTACCTTTTCATTATTGTTGATGTAAGAGGGCGCCCTCTAGGGCTCAATGGGTATCCTCATGAGTTGGTATCAGATGGGGTTGATGAGGGTGAAGGGCAGAAGTCTTCAGTTTTGGTGTTGAGAGGAATGGAGTATTCTTCAGAGGAATGTGAGCAATTGTATGGGTTTTTGCCATGCAGCAACAATATTTTTGGGCATCTGTTCCTAATTGTTGTGTATGAATACTTGATGTTTCATGGAGAGTCATATGTGGCATCTGGGGGTGAGCAGATTTTCAAGATTTTGGGGCCTGGGGTGTTTGGTGCCAGTGTGTTTCAGGTCCTTGGTGCTCTCCCTGAGTCCTTGATTCTTCTTGCGTCTGGACTTCTGAACAGCAAAGACACTGCTCAAGAGTATGTGCTCACCGCCGTCGGCTTGTTGGCCGGATCGACGATCTTGCTCCTCACTGTACTTTGGGGCACTTGTGTCATTGTTGGGAGTTGTGAGTTTCCCGGCGCTGGTTCGGGCGCTACGGTTGATGCAAATTTATTACAAAAACCATATCGGAAAATATTATTGATGTTAACGGGTAGTGGGATTGCAACAGATGAAGAAACTGGGTACATGGCAAGGATCATGGGTCTATCAATAATACCATTCATCATCATCCAAATCACAATATTATTCCAATTGTCTTATGGGGAACGCGTTGTGATCTTGATCACTCTTATTGTTTCTCTTATTTTTCTTCTCCTCTACTTCATCTATCAGATATTTCAGCCTTGGATTCAGCAAAGAAGATTAGAGTACGTAAAACATGATCATTTAGTGATAAGAATTTTACGATACTTCCAAGAACATGCTGTAGGAAAACTCCTCACAGACGAAGGAGCTCCGAACATAAGTGTTATAAGAGGGCTGTTTGAGGAAACAGACCTTGATGGTGATGACTATATATCGCCTGCTGAAATCAAGGAGCTTCTTCTTGGGATCAGGTTTCGAAAACCACACTTGATCAATAAGGAAGATGCAGTGCTAGATGTTCTAGGACAGTTTGATATTGATGGTGACGGAACAATAACAAAGGATGAGTTCATAGCTGGGATCTCAAAATGGCTTGATGAGACAAAGAAAGGATTGCATGACAGAAGTTACTCCAATAATTCATTGAAAGATCTACAACAGGTTCTTCGGCCTTGGATTCTAAAGAGAAGGAACGAAAAAGAAATGAAGGAAAAATTGATGTCTGGGATTTTAAGACATGTTCAAAACAGTGGCCTAGGAAGCCTGCTTAAAGAGGATAACACGCCGGATATAGCAAATATAAAAAGCCTCTTTGAGAGAATTGATCTTGATGGAGACAATTGCATATCACAAGCTGAACTAAAAGAACTCATTATGAGCATCAAGTTTGGAGACATGCCGCTAGACGTAGACGAAGCGGTCGCAAGAATAATGGAAAAACTTGACGTCAATGGAGACCGATTAATCGATGAGGAGGAGTTCATCCAAGGCCTTGCCAAATGGGTTAACATTTCCAGCCATCAGGCCCTGCAGTCGCCCAAACCGAACGACGAAATATTCCTTAAAGCTTGGAAAGAGACAGACGAGTTGGTAGAACAGACCAGTGCAGGGCCAGTTGATAAATCTCCTTGGGCATGGTTCAAGGCCATAATGCTTTTGTTGGCTGGAATTCTTATTCTATCTGTTCTAGCAGAACCCCTCATACATAGTGTACAATCCTTCTCAACAGCTGCTAATATATCGTCGTTTTTCATCGCATTCATCCTCGTCCCGTTAGCTACCAACGCTAGGGCTGCAACTTCAGCGATCTCCGCCGCGAGTAGAAGAAAAGAAAGAACTACTTCCTTGACATTTTCTGAGATCTATGGAGGAGTCTTCATGAACAATGTCCTAGGGATTTCAGTACTATTGTCCATAATTTACGTACGCGAATTGACATGGGATTTCTCGGCTGAAGTACTCGTTGTTATGATCGTATGCGTGGTGATGGGCATGTTTGCAAGCTTGCGCTCCACCTTCCCAGTCTGGACATCGATCGTTGCATACTTACTGTATCCATTGTCTTTGCTTTTGGTTTATGCTCTTGATGGTTTTGCCAAATGGTTCTAA 2157 0.4242 MWKIPKNRTFSIFLIYLFIIVDVRGRPLGLNGYPHELVSDGVDEGEGQKSSVLVLRGMEYSSEECEQLYGFLPCSNNIFGHLFLIVVYEYLMFHGESYVASGGEQIFKILGPGVFGASVFQVLGALPESLILLASGLLNSKDTAQEYVLTAVGLLAGSTILLLTVLWGTCVIVGSCEFPGAGSGATVDANLLQKPYRKILLMLTGSGIATDEETGYMARIMGLSIIPFIIIQITILFQLSYGERVVILITLIVSLIFLLLYFIYQIFQPWIQQRRLEYVKHDHLVIRILRYFQEHAVGKLLTDEGAPNISVIRGLFEETDLDGDDYISPAEIKELLLGIRFRKPHLINKEDAVLDVLGQFDIDGDGTITKDEFIAGISKWLDETKKGLHDRSYSNNSLKDLQQVLRPWILKRRNEKEMKEKLMSGILRHVQNSGLGSLLKEDNTPDIANIKSLFERIDLDGDNCISQAELKELIMSIKFGDMPLDVDEAVARIMEKLDVNGDRLIDEEEFIQGLAKWVNISSHQALQSPKPNDEIFLKAWKETDELVEQTSAGPVDKSPWAWFKAIMLLLAGILILSVLAEPLIHSVQSFSTAANISSFFIAFILVPLATNARAATSAISAASRRKERTTSLTFSEIYGGVFMNNVLGISVLLSIIYVRELTWDFSAEVLVVMIVCVVMGMFASLRSTFPVWTSIVAYLLYPLSLLLVYALDGFAKWF* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0165 718 CDD EFh 312 378 IPR002048 GO:0005509
Vvi19g0165 718 FunFam Sodium/calcium exchanger NCL2 555 711 - -
Vvi19g0165 718 Gene3D - 264 392 - -
Vvi19g0165 718 ProSitePatterns EF-hand calcium-binding domain. 458 470 IPR018247 -
Vvi19g0165 718 SMART efh_1 449 477 IPR002048 GO:0005509
Vvi19g0165 718 SMART efh_1 489 517 IPR002048 GO:0005509
Vvi19g0165 718 SMART efh_1 352 380 IPR002048 GO:0005509
Vvi19g0165 718 SMART efh_1 311 339 IPR002048 GO:0005509
Vvi19g0165 718 SUPERFAMILY EF-hand 309 517 IPR011992 -
Vvi19g0165 718 CDD EFh 450 515 IPR002048 GO:0005509
Vvi19g0165 718 ProSiteProfiles EF-hand calcium-binding domain profile. 485 520 IPR002048 GO:0005509
Vvi19g0165 718 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 67 705 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vvi19g0165 718 ProSiteProfiles EF-hand calcium-binding domain profile. 445 480 IPR002048 GO:0005509
Vvi19g0165 718 Pfam Sodium/calcium exchanger protein 566 709 IPR004837 GO:0016020|GO:0055085
Vvi19g0165 718 Pfam EF-hand domain pair 449 512 IPR002048 GO:0005509
Vvi19g0165 718 Pfam EF-hand domain pair 311 375 IPR002048 GO:0005509
Vvi19g0165 718 ProSitePatterns EF-hand calcium-binding domain. 320 332 IPR018247 -
Vvi19g0165 718 Gene3D - 397 526 - -
Vvi19g0165 718 ProSiteProfiles EF-hand calcium-binding domain profile. 307 342 IPR002048 GO:0005509
Vvi19g0165 718 ProSitePatterns EF-hand calcium-binding domain. 498 510 IPR018247 -
Vvi19g0165 718 ProSiteProfiles EF-hand calcium-binding domain profile. 348 383 IPR002048 GO:0005509
Vvi19g0165 718 ProSitePatterns EF-hand calcium-binding domain. 361 373 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0165 Vvi-Chr19 1859320 1866189 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0165 403 717 EF-hand Containing Proteins AT1G53210 45.122 7.69e-80 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0165 - - vvi:100241883 1340.48