Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0164 ATGGCCACCACCGCTTCCGGCTCCGTCCTCCTCCTTCTGCTCCTCGCCGCCGGCGCTTCCGTCGACGGCAGAGTCATAAGCAACCGCACATCGTCCACCGGCCTAGTCTCTGACGGCGTCCACGACCACCGCGATGGCTCGCCTTATCTTCTTCTCAGATCATTTTCCGCTGTTTCAGCCTCGGATTCATGTGATCAGACGTACGGATTCATGCCCTGCACAACGACAACAGTGGGTAACCTCTTCCTCATCCTGGTCTATGGTTACCTCATGTTCCTCGCCGCAACCTATCTTTCCTCCGGCAGTGAGCTCCTGCTTGAACTCTTGGGTCCTGGCCTGGTCGGTGGCCTCTTGCTTCCCATTCTCGGCGCTCTTCCCGATGCCATGCTTATCCTTGTATCTGGCCTGTCTGGAAGTACAGAAACTGCACAGAGTCAGGTCTCTGTAGGAATGGGGTTGCTTGCTGGATCAACTGTAATGCTCCTTACAATAATATGGGGAACTTGTGTTATTGTTGGCAAGTGTGACCTTCAGGATTCAGTTGCCAAAGACTCACAAGATACCAAAGGATTTAGCCTAACCGGTTCTGGTGTTAGTACCGATATCTGGACTAGTTACGCTGCAATCATCATGGTGATATCAGTCATCCCATTTATCATTGTCCAACTACCTCAAGTTCTACATTCAACTTCAGCAAGACGCTTAGCAGTCTTGATTGCGCTTATTGTCTCCCTTATATTATTGATTACTTATTGCTTGTACCAGGTTTTTGTGCCTTGGATACAAAAGAGACGACTTGCTTATGCAAAGCATAAACATGTAATATCTGGACTTCTTAAACATTTAAGAAAGCGCGCACTCGGAAAGCTCCTAACGGAGGAAGGTGAACCTAATGAAGAAATTATAAGAAAGCTTTTTCATACAATTGATGAGAATCACGATGGGAACCTTTCAAAAGCCGAATTAAGAGCATTGATTGTAGGAATTCAGTTTGAGGAGATAGACTTGGATAAGAATGAGGCTGTGGACAAAGTGATGAGTGATTTTGATACATCCAATGATCAGTTTGTTGATGAGGGAGAGTTTGTCAAAGGAATTTCAAGATGGCTTATGGAAGCAAAGCGTTATGGGGGTTCTGGTCCTGATGCTGGTCCTAATTCATCAAGTGTTTTAGATGCTTTTCACAGGGTAAGTTGTCTCATAACAACCTTCTCCAGCAGCAGCTTATTATGA 1233 0.4615 MATTASGSVLLLLLLAAGASVDGRVISNRTSSTGLVSDGVHDHRDGSPYLLLRSFSAVSASDSCDQTYGFMPCTTTTVGNLFLILVYGYLMFLAATYLSSGSELLLELLGPGLVGGLLLPILGALPDAMLILVSGLSGSTETAQSQVSVGMGLLAGSTVMLLTIIWGTCVIVGKCDLQDSVAKDSQDTKGFSLTGSGVSTDIWTSYAAIIMVISVIPFIIVQLPQVLHSTSARRLAVLIALIVSLILLITYCLYQVFVPWIQKRRLAYAKHKHVISGLLKHLRKRALGKLLTEEGEPNEEIIRKLFHTIDENHDGNLSKAELRALIVGIQFEEIDLDKNEAVDKVMSDFDTSNDQFVDEGEFVKGISRWLMEAKRYGGSGPDAGPNSSSVLDAFHRVSCLITTFSSSSLL* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0164 410 Gene3D - 109 263 IPR044880 -
Vvi19g0164 410 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 51 287 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vvi19g0164 410 CDD EFh 302 367 IPR002048 GO:0005509
Vvi19g0164 410 SMART efh_1 341 369 IPR002048 GO:0005509
Vvi19g0164 410 SMART efh_1 301 329 IPR002048 GO:0005509
Vvi19g0164 410 Gene3D - 264 376 - -
Vvi19g0164 410 ProSiteProfiles EF-hand calcium-binding domain profile. 297 332 IPR002048 GO:0005509
Vvi19g0164 410 Pfam EF-hand domain pair 302 365 IPR002048 GO:0005509
Vvi19g0164 410 Pfam Sodium/calcium exchanger protein 82 257 IPR004837 GO:0016020|GO:0055085
Vvi19g0164 410 SUPERFAMILY EF-hand 294 375 IPR011992 -
Vvi19g0164 410 ProSiteProfiles EF-hand calcium-binding domain profile. 337 372 IPR002048 GO:0005509
Vvi19g0164 410 ProSitePatterns EF-hand calcium-binding domain. 310 322 IPR018247 -
Vvi19g0164 410 FunFam Sodium/calcium exchanger family protein / calcium-binding EF hand family protein 274 396 - -
Vvi19g0164 410 ProSitePatterns EF-hand calcium-binding domain. 350 362 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0164 Vvi-Chr19 1837652 1843328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0164 24 395 EF-hand Containing Proteins AT1G53210 65.957 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0164 - - vvi:100264164 709.138