Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0159 ATGCTCATATTTCCTCTACTTCGCTTCTCTCCTCCTCCTCTGTGGCTGCAGCGGCTCCCATGTCAACCCCTAACCCCATTTTCAAAATTTTCCCCAAAAATCCCCTACCCAACTATCCACTCCTCGCCATTTTCATCTCCTCTTCGCATTCTCCCCGCAAAATTTTCTGGGTATCCCAGAAAATTTCCGAATTCTCTATTATCGAGTTATTTGGCTTCCGCTTCAGCCGGGGAGGATGAGTTCGAAGTTGAATTGGACCGCCTATTGGCTCTGTTGCCGGAGGAGATGCGTCGGAGAGTAAGCGAGCACCCGGAGCTCCACCAGTTGATTGAAGTTGTCATGGATTTGGGTCGGAAGCCGCTGGCCCGGTTTCCCTCCGGCGACTTTGTTTTGTCTGATTGTCCGATCACTGTTCAGGATATTGAGTTTGCTACTTCTCAGGTTGGTGACTTTGCCATTGATAACCGGGCAGGTATCAGCCGGACGTTACACCGCATAAGTGCTATAAGGAATCGGAAGGGTGCAATTATTGGTTTAACTTGTCGTGTTGGTCGGGCAATATCAGGAAGTGCCAACTTGTTGCAAGATTTGGTTAAAGATGGGGCTTCTTTGTTGCTCATTGGGCCTCCAGGAGTAGGAAAAACTACAATTATCAGGGAAGTAGCTAGGATGCTTGCAAATGATTACAAGAAACGTGTGATGATTGTTGATACCTCAAATGAGATTGGTGGGGATGGTGATATACCTCATGCAGGAATAGGTAATGCTCGTCGGATGCAAGTTCCCAACTCTGATATGCAACATAAGGTACTAATAGAAGCTGTTGAAAATCATATGCCTCAAGTGATTGTAATTGATGAAATTGGCACGAAGCTTGAAGCCATGGCTGCTAGCACAATTGCACAACGTGGGATTCAGCTGGTTGCCACTGCTCATGGAGTAACCATAGAGAATTTGATAATGAATCCTTCTTTAGAGATGCTTGTCGGAGGAATCCAGAGTGTAACACTAGGGGATGAAGAGGCAAGCCGAAGGGGGGTACAGAAGACAGTGCTTGAGAGGAAAGGTCCCTCAACATTTAGTTGTGGTGTGGAGATAATTTCAAAAACTGAGTTGCAAGTTCATCCTAGCTTAGAAGCTACTGTGGATGCTATCCTTTCAGGTCGATTCCCACATTTTGAAGTGAGGAAGATAAACTCTCAGGGAGTGGAAAACAAAGTACAAAGTGAAGCTTTTGTTCACAATTCATCTGATGAGAAAAATGAGGTGGTTGAAGATGGTCTGGAGATGAATGAGGAAAGCAGTACCCTTGATGAACTCATTTGTGAACCTCCTCCAGACATGGGGGGGAGTTCTGCTCAAGATACATCACCTGTCCGAGTATTTGCTTATGGGTTTTTCTAG 1404 0.4566 MLIFPLLRFSPPPLWLQRLPCQPLTPFSKFSPKIPYPTIHSSPFSSPLRILPAKFSGYPRKFPNSLLSSYLASASAGEDEFEVELDRLLALLPEEMRRRVSEHPELHQLIEVVMDLGRKPLARFPSGDFVLSDCPITVQDIEFATSQVGDFAIDNRAGISRTLHRISAIRNRKGAIIGLTCRVGRAISGSANLLQDLVKDGASLLLIGPPGVGKTTIIREVARMLANDYKKRVMIVDTSNEIGGDGDIPHAGIGNARRMQVPNSDMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGVTIENLIMNPSLEMLVGGIQSVTLGDEEASRRGVQKTVLERKGPSTFSCGVEIISKTELQVHPSLEATVDAILSGRFPHFEVRKINSQGVENKVQSEAFVHNSSDEKNEVVEDGLEMNEESSTLDELICEPPPDMGGSSAQDTSPVRVFAYGFF* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0159 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 343 IPR027417 -
Vvi19g0159 467 CDD AAA 201 290 - -
Vvi19g0159 467 Pfam Sporulation stage III, protein AA 179 330 IPR045735 -
Vvi19g0159 467 PANTHER KINASE-RELATED 73 413 - -
Vvi19g0159 467 SMART AAA_5 200 331 IPR003593 GO:0016887
Vvi19g0159 467 Gene3D - 180 374 IPR027417 -
Vvi19g0159 467 FunFam uncharacterized protein ycf45 isoform X2 165 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0159 Vvi-Chr19 1775804 1784504 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0159 - - vvi:100243620 910.598