Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0158 ATGGCTTCAGAGCCATTAGGCGGTGGGGGCGGCGATTCGAGAGAGAAACAGAAGTGGGCAGAGAGCGGCAAAGTCTATAAGCGCAAAAACCATAACAAAGGCATCAAAATCAACAACGAGAGCAGCATCATTAACAACAACGTGGCTCAACAATCCTCACAAACCCTAGCGACTACCACCGAAGACGCGAACTCATTGCAGCCGCAGGCTCTATCGCGGTTCGATGCGGCGTCGGACGACTCGTCGAGCCACACCCCTCCTGCGGAAAACGGGCGGGAGAATATGAACGGGAACGGAGTGAAACCGGAGGATCCTAATGTTGAAAAGATCAGGTTTCGTTCGATTTCGATGAGATCGAAAGTGGAGAAAAGGGATTTGAGGAGGAAACTTTTGGGTGAGCTTGATCAAGTGAGAAGTTTGGCGAAGAAACTAGACACTAACGACGGTCAGCTTAGTGGGTATGCGCATTCGCAGGTGTCGGGTAACGATGGGCTTGATAGAGGTGGAGGTGCATTGAGGGTGAATTCGGAGGTGGGTTCTGTGGGGGTTCAAGATTCACGGCCGTTTCGAGGGCTCAGTGTCTCAGTGATGGGGAACAGTCATGGGATTGGTGAATTTGTGGAGAAGGAGAAGAGGACACCCAAGGCCAATAAGTATTATCAGAATCCAGATTTTGTCCTTGGGAAAGACAAATTGCCACCTCCGGAGAGTAACAAGAAGCCCAAATCCAACGGGGTAGGAATCGACAAGTATGTGGCTCAAGCATTCAAGAATTGTAGTAATTTGCTTGCAAAGTTGATGAAGCACAAGCATGGTTGGGTGTTTAACAATCCGGTTGACGTGAAGGGGCTCGGATTACATGATTATTATTCAATTATAAAACACCCGATGGATTTTGGTACAGTGAAGAGTAGGTTAAGCAAGAATTGGTATAAGTCCCCAAGGGAATTTGCCGAGGATGTCAGACTCACATTGCAAAATGCCATGACTTATAACCCCAAAGGACAGGATGTTCACTGCATGGCAGAGGAGTTGCTGAAAATATTTGAGGAGAAGTGGGCGGCTATTGAGGCCGACCTTTACTGGAGGTTTGGGATGGGCCATGATGCTGGAACACCCACGCCCACTTCAAGGAAGGCTCCTTATCTTCATCATCATCATTCTCCAGAAATGAGGACTGTGGATAGGTCCGGGTCTATGGCAATGCCTATTGATTCCAATTTGAAACCTGGAAATTTTGCTCATATGAGGATGCCAGTCCCAAAGAAACCCAAAGCAAAGGATCCCCATAAGAGGGATATGACATATGAGGAGAAGCAGAAGCTTAGCTCAAACCTCCAAAGCTTGCCATCAGAAAAGCTGGATCATATTGTTCAGATTATCAAGAAGAGGAATTCAGCTGTTAGTCAACAAGATGATGAGATTGAAGTGGACATAGACAGTGTTGATGCTGAAACACTTTGGGAACTTGATAGGTATGTAACTAATTATAAGAAGAGTTTGAGCAAGAACAAGAGAAAAGCTGAACTTGCTTTCCAGGCAAGAGCAAATAGTGACCACAATATCCAGGAAATGTACTCGTCCTCAGCCACAGCAGGAGCACCAAAAGAAACTAAATCAGATGGAGAACATGTTTCCGCTTCTCCCATTCAAGCAGAAAAGCAAGGTGATAATGCAGGGGGAGGATCAAGTAGTTCGAGTTCAAGCAGTGATTCTGGATCTTCTTCAAGTGATTCTGACAGTGAAAGTTCTTCTGCATATGGATCAGATGCAGGTCATTCACCTAAGAATTGA 1794 0.4615 MASEPLGGGGGDSREKQKWAESGKVYKRKNHNKGIKINNESSIINNNVAQQSSQTLATTTEDANSLQPQALSRFDAASDDSSSHTPPAENGRENMNGNGVKPEDPNVEKIRFRSISMRSKVEKRDLRRKLLGELDQVRSLAKKLDTNDGQLSGYAHSQVSGNDGLDRGGGALRVNSEVGSVGVQDSRPFRGLSVSVMGNSHGIGEFVEKEKRTPKANKYYQNPDFVLGKDKLPPPESNKKPKSNGVGIDKYVAQAFKNCSNLLAKLMKHKHGWVFNNPVDVKGLGLHDYYSIIKHPMDFGTVKSRLSKNWYKSPREFAEDVRLTLQNAMTYNPKGQDVHCMAEELLKIFEEKWAAIEADLYWRFGMGHDAGTPTPTSRKAPYLHHHHSPEMRTVDRSGSMAMPIDSNLKPGNFAHMRMPVPKKPKAKDPHKRDMTYEEKQKLSSNLQSLPSEKLDHIVQIIKKRNSAVSQQDDEIEVDIDSVDAETLWELDRYVTNYKKSLSKNKRKAELAFQARANSDHNIQEMYSSSATAGAPKETKSDGEHVSASPIQAEKQGDNAGGGSSSSSSSSDSGSSSSDSDSESSSAYGSDAGHSPKN* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0158 597 Gene3D - 427 508 IPR038336 -
Vvi19g0158 597 MobiDBLite consensus disorder prediction 527 597 - -
Vvi19g0158 597 PANTHER OSJNBA0053K19.4 PROTEIN 104 589 - -
Vvi19g0158 597 MobiDBLite consensus disorder prediction 551 591 - -
Vvi19g0158 597 Pfam Bromodomain extra-terminal - transcription regulation 434 495 IPR027353 -
Vvi19g0158 597 MobiDBLite consensus disorder prediction 14 28 - -
Vvi19g0158 597 PRINTS Bromodomain signature 302 320 IPR001487 GO:0005515
Vvi19g0158 597 PRINTS Bromodomain signature 320 339 IPR001487 GO:0005515
Vvi19g0158 597 PRINTS Bromodomain signature 286 302 IPR001487 GO:0005515
Vvi19g0158 597 PRINTS Bromodomain signature 270 283 IPR001487 GO:0005515
Vvi19g0158 597 MobiDBLite consensus disorder prediction 410 445 - -
Vvi19g0158 597 CDD Bromo_plant1 255 353 IPR037377 -
Vvi19g0158 597 ProSiteProfiles Bromodomain profile. 267 339 IPR001487 GO:0005515
Vvi19g0158 597 Gene3D - 250 360 IPR036427 GO:0005515
Vvi19g0158 597 MobiDBLite consensus disorder prediction 224 245 - -
Vvi19g0158 597 MobiDBLite consensus disorder prediction 74 92 - -
Vvi19g0158 597 Pfam Bromodomain 259 343 IPR001487 GO:0005515
Vvi19g0158 597 MobiDBLite consensus disorder prediction 1 48 - -
Vvi19g0158 597 MobiDBLite consensus disorder prediction 421 439 - -
Vvi19g0158 597 ProSiteProfiles NET domain profile. 424 505 IPR027353 -
Vvi19g0158 597 SMART bromo_6 248 358 IPR001487 GO:0005515
Vvi19g0158 597 SUPERFAMILY Bromodomain 241 360 IPR036427 GO:0005515
Vvi19g0158 597 MobiDBLite consensus disorder prediction 74 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0158 Vvi-Chr19 1739220 1741331 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0158 - - vvi:100255658 1121.3