Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0157 ATGAAGGCATCAATGGCGATGAGATCCGTACGATCGGCGTTGAGGAGTGGCTCTTCTTCTTCGCCTTCTCATTTCCTTCGCCGTTGCTACTGCTCAGAGTCAGTTCCTGAACGAAAGGTAACCATTCTCGGTGCCGCCGGCGGAATCGGCCAGCCTCTTGCACTGCTTATGAAGATCAACCCTCTGGTCTCTAATCTCGCACTCTACGATATCGCTGGAACCCCCGGAGTCGCCGCCGACGTCAGCCACGTCAACACCATATCTCAGGTTGCTGGATTCATGGGTGAAGATCAGCTAGGAAAAGCTCTAGAGGGATCGGACGTGGTCATAATTCCGGCTGGTGTCCCGAGAAAGCCGGGTATGACTCGTGATGATCTCTTTAACATCAATGCCGGCATTGTTAAATCTCTTTGCATTGCTATCGCCAAGTATTGCCCGAATGCTCTTGTTAACGTGATAAGCAATCCCGTGAACTCAACGGTGCCAATTGCTGCTGAAGTTTTTAAGAAAGCAGGGACTTTTGATGAGAAGAAACTTTTTGGTGTGACCACACTTGATGTGGTTAGGGCTAAGACTTTCTATGCTGCAAAGGCAAAAGTACCAGTTTCAGAGGTTAATGTACCCGTTGTTGGCGGCCATGCTGGCATAACCATTCTGCCTCTATTTTCTCAAATATTCAAGCTCTTACAAAGCGAACACAAGATGGGGGGACGGAAGTTGTGGAAGCAAAGGCTGGAAAGGGCTCTGCAACTTTATCAATGGCCTATGCAGGAGCCATTTTTGCTGATGCTTGCCTGA 798 0.49 MKASMAMRSVRSALRSGSSSSPSHFLRRCYCSESVPERKVTILGAAGGIGQPLALLMKINPLVSNLALYDIAGTPGVAADVSHVNTISQVAGFMGEDQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCIAIAKYCPNALVNVISNPVNSTVPIAAEVFKKAGTFDEKKLFGVTTLDVVRAKTFYAAKAKVPVSEVNVPVVGGHAGITILPLFSQIFKLLQSEHKMGGRKLWKQRLERALQLYQWPMQEPFLLMLA* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0157 265 Gene3D - 183 248 IPR015955 GO:0003824|GO:0016616
Vvi19g0157 265 NCBIfam malate dehydrogenase 39 232 IPR010097 GO:0006099|GO:0030060
Vvi19g0157 265 SUPERFAMILY LDH C-terminal domain-like 182 228 IPR015955 GO:0003824|GO:0016616
Vvi19g0157 265 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 183 231 IPR022383 GO:0016616
Vvi19g0157 265 PANTHER MALATE AND LACTATE DEHYDROGENASE 21 226 - -
Vvi19g0157 265 Pfam lactate/malate dehydrogenase, NAD binding domain 39 181 IPR001236 GO:0016491
Vvi19g0157 265 FunFam Malate dehydrogenase 36 182 - -
Vvi19g0157 265 Gene3D - 37 182 - -
Vvi19g0157 265 MobiDBLite consensus disorder prediction 1 23 - -
Vvi19g0157 265 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 39 181 IPR036291 -
Vvi19g0157 265 ProSitePatterns Malate dehydrogenase active site signature. 182 194 IPR001252 GO:0006108|GO:0016615
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0157 Vvi-Chr19 1728015 1731541 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0157 K00026 - vvi:100253724 408.297