Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0138 ATGGCGAACAGCAACCTTCCTCGCCGGATCATCAAGGAAACTCAACGTCTCCTTAGTGAACCAGCGCCGGGAATCAGTGCTTCGCCATCTGAAGACAATATGAGATATTTTAATGTCATGATCCTTGGTCCAACTCAATCTCCATATGAAGGTGGGGTTTTCAAGTTGGAGTTGTTTCTGCCTGAAGAATATCCAATGGCAGCTCCCAAGGTTCGTTTTCTCACCAAAATATATCATCCTAACATCGACAAGCTCGGAAGGATATGCCTTGATATCCTGAAAGACAAATGGAGCCCTGCTCTCCAGATTCGAACCGTACTCTTGAGCATTCAAGCACTACTAAGTGCTCCAAACCCGGATGATCCTCTTTCTGAGAACATTGCTAAGCATTGGAAGACAAACGAAGCTGAAGCTGTTGAAACAGCGAAGGAATGGACTCGCCTGTATGCAAGTGGCGCATGA 462 0.461 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0138 153 FunFam Ubiquitin-conjugating enzyme E2 36 1 152 - -
Vvi19g0138 153 Gene3D Ubiquitin Conjugating Enzyme 1 152 IPR016135 -
Vvi19g0138 153 SUPERFAMILY UBC-like 7 151 IPR016135 -
Vvi19g0138 153 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 151 IPR000608 -
Vvi19g0138 153 SMART ubc_7 8 151 - -
Vvi19g0138 153 CDD UBCc 7 146 IPR000608 -
Vvi19g0138 153 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Vvi19g0138 153 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 33 138 - -
Vvi19g0138 153 Pfam Ubiquitin-conjugating enzyme 9 145 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0138 Vvi-Chr19 1528769 1546843 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0138 8 118 Miscellaneous Gene Families AT3G17000 29.060 1.15e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0138 K10580 - tcc:18594172 311.227