Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0131 ATGGCGAATCGGAATATTGAGAAAATGGCTTCGATCGATGCTCAGTTGAGGCTTCTGGTGCCTGCAAAAGTGTCTGAAGATGACAAATTGGTGGAGTATGACGCTCTTTTACTGGATCGGTTTCTGGATATTCTGCAGGATTTGCATGGAGAAGACCTCAAGGAAACGGTTCAAGAGTGTTATGAGCTTTCTGCTGAGTACGAAGGAAAACACGACCCCAAGAAGTTGGAGGAACTTGGAAATGTGTTGACGAGTTTGGATGCAGGGGACTCCATTGTCATTGCAAAATCTTTTTCTCACATGCTTAACTTGGCCAACTTGGCCGAGGAGGTTCAGATTGCATACCGTAGACGGAACAAGTTGAAGAAGGGTGATTTTGCTGATGAGAACAATGCAACAACTGAATCAGACATTGAAGAAACTCTCAAGAAACTAGTGGTGCAGCTGAAGAAGTCCCCTGAAGAAGTTTTTGATGCTCTCAAGAATCAGACCGTGGATCTGGTCCTTACTGCCCACCCCACCCAATCAGTCCGTAGATCGTTACTTCAGAAGCATGGCAGGATCCGGAACTGTTTAGCCCAGTTATATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGAGAGATTCAAGCAGCATTTCGCACAGATGAGATCCGGAGGACCCCTCCTACTCCACAAGATGAGATGAGGGCAGGAATGAGTTATTTCCATGAAACAATCTGGAAGGGTGTCCCTAAATTCTTGCGCCGTGTTGACACAGCTTTGAAAAACATAGGCATAAATGAACGTGTTCCTTACAATGCACCTCTAATTCAGTTCTCTTCTTGGATGGGTGGTGATCGTGATGGTAACCCAAGGGTGACTCCTGAGGTCACAAGGGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAACTTATACTATTCCCAGATAGAGGATCTTATGTTTGAGTTGTCTATGTGGCGATGCAATGACGAACTTCGTGTTCGTGCAGATGAACTCCTCAGATCTTCAAAGAAAGATGCAAAACACTATATAGAGTTTTGGAAACAAATTCCTCCAAGTGAACCTTATCGTGTTATCCTTGGCGAAGTGAGGGACAAACTGTATCAAACACGTGAACGTTCTCGTCATTTACTAGCCCATGGGATCTCTGACATTCCAGGGGAGGCAACTTACACCAATCTTGAGCAGTTCTTGGAACCTCTTGAACTCTGTTACAGATCACTCTGTGCTTGTGGTGACCGACCAATTGCTGATGGAAGCCTTCTCGATTTTCTGAGACAAGTGTCCACATTTGGACTTTCACTTGTGCGTCTTGATATTAGGCAAGAATCTGACCGACACACTGATGTAATTGATGCCATTACTAGGCACTTGGAAATTGGTTCCTACCGAGAATGGTCTGAAGAACGCCGTCAGGAATGGCTTTTGTCTGAACTAAGTGGGAAGCGGCCACTGTTTGGCCCTGATCTTCCAAAAACTGAAGAAATTGCTGACGTTCTGGACACATTTCACGTCATAGCAGAACTCCCAGCAGACAACTTTGGAGCATACATCATCTCCATGGCCACTGCCCCATCTGATGTGCTTGCAGTCGAGCTCCTTCAACGTGAATGCCATGTGAAGCAACCATTAAGAGTTGTTCCACTGTTTGAGAAACTTGCTGATCTAGAGGCTGCTCCAGCTGCTGTTGCTCGTCTGTTCTCAATAGATTGGTACAAAAATCGGATTAATGGGAAACAAGAAGTCATGATTGGGTACTCAGATTCTGGGAAAGACGCTGGAAGGCTCTCAGCGGCATGGGCATTATACAAGGCTCAAGAGGAGCTTATTAAAGTTGCTAAGCAATATGGTATCAAGCTAACCATGTTCCATGGTCGAGGTGGCACAGTTGGAAGAGGAGGTGGTCCAACCCATCTTGCTATATTGTCTCAACCACCAGATACAATTCATGGTTCACTCCGAGTAACTGTCCAAGGAGAAGTTATTGAGCAGTCCTTTGGAGAGGAGCACTTGTGTTTTAGAACACTCCAGCGTTTCACAGCTGCAACACTCGAACATGGAATGCATCCCCCAATCTCGCCAAAACCAGAATGGCGTGCTCTTATGGACGAAATGGCTGTTGTTGCTACGGAGAATTATCGTTCAATTGTTTTCCAAGAACCTCGATTTGTTGAGTATTTCCGCCTTGCTACACCAGAGCTGGAGTATGGTAGAATGAACATTGGTAGCCGTCCATCAAAGCGTAAGCCAAGTGGGGGAATTGAATCGCTCCGTGCAATCCCATGGATCTTTGCCTGGACACAGACAAGGTTCCATCTCCCAGTGTGGCTTGGCTTTGGAGGAGCTTTTAAATATGCCATTGAGAAGGATATCAGGAATCTACATTTGCTGCAGGAGATGTACAACGAATGGCCTTTCTTTAGGGTCACCATTGATTTGGTTGAAATGGTGTTTGCCAAGGGAGACCCTGGGATTGCAGCTCTGTATGACAAGCTCCTTGTGTCAAAAGACCTGTGGTCATTTGGAGAGCGGTTGAGGTCCAACTATGAACAAACTAAGAGCCTTCTCCTCCAGATTGCTGGACACAAGGACCTTCTTGAAGGGGATCCCTACTTGAAGCAAAGACTCCGCCTGCGTGACTCCTACATCACAACCCTAAATGTCTGCCAAGCATGTACGCTGAAACGGATTCGTGACCCCAGCTACGATGTTAAGGTGAGGCCACACATCTGCAAGGACATAATGGAATCAGCAGCTCAAGAACTTGTGAATCTGAACCCAACGAGCGACTACGGCCCTGGTTTGGAGGACACCCTCATCTTGACAATGAAGGGTATTGCAGCAGGCATGCAGAACACCGGTTAA 2892 0.462 MANRNIEKMASIDAQLRLLVPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDLKETVQECYELSAEYEGKHDPKKLEELGNVLTSLDAGDSIVIAKSFSHMLNLANLAEEVQIAYRRRNKLKKGDFADENNATTESDIEETLKKLVVQLKKSPEEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRIRNCLAQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFELSMWRCNDELRVRADELLRSSKKDAKHYIEFWKQIPPSEPYRVILGEVRDKLYQTRERSRHLLAHGISDIPGEATYTNLEQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVIDAITRHLEIGSYREWSEERRQEWLLSELSGKRPLFGPDLPKTEEIADVLDTFHVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAAVARLFSIDWYKNRINGKQEVMIGYSDSGKDAGRLSAAWALYKAQEELIKVAKQYGIKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPISPKPEWRALMDEMAVVATENYRSIVFQEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGGAFKYAIEKDIRNLHLLQEMYNEWPFFRVTIDLVEMVFAKGDPGIAALYDKLLVSKDLWSFGERLRSNYEQTKSLLLQIAGHKDLLEGDPYLKQRLRLRDSYITTLNVCQACTLKRIRDPSYDVKVRPHICKDIMESAAQELVNLNPTSDYGPGLEDTLILTMKGIAAGMQNTG* 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0131 963 Gene3D Phosphoenolpyruvate/pyruvate domain 308 443 - -
Vvi19g0131 963 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 591 603 IPR033129 -
Vvi19g0131 963 Pfam Phosphoenolpyruvate carboxylase 36 963 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vvi19g0131 963 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 33 963 IPR015813 GO:0003824
Vvi19g0131 963 Hamap Phosphoenolpyruvate carboxylase [ppc]. 23 963 IPR022805 GO:0006099|GO:0008964|GO:0015977
Vvi19g0131 963 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 168 179 IPR018129 -
Vvi19g0131 963 PRINTS Phosphoenolpyruvate carboxylase signature 220 236 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vvi19g0131 963 PRINTS Phosphoenolpyruvate carboxylase signature 631 660 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vvi19g0131 963 PRINTS Phosphoenolpyruvate carboxylase signature 280 295 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vvi19g0131 963 PRINTS Phosphoenolpyruvate carboxylase signature 440 460 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vvi19g0131 963 PRINTS Phosphoenolpyruvate carboxylase signature 763 789 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vvi19g0131 963 PRINTS Phosphoenolpyruvate carboxylase signature 167 180 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vvi19g0131 963 PRINTS Phosphoenolpyruvate carboxylase signature 589 609 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vvi19g0131 963 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 5 963 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vvi19g0131 963 FunFam Phosphoenolpyruvate carboxylase 1 308 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0131 Vvi-Chr19 1470391 1476844 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0131 K01595 - vvi:100267525 1914.43