Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0129 ATGTCTTATCCCTCTCCATTCATACTCTCATTTGTCTTCCTATTCTCCATTTCAATCTCTTCTTTCATTGCTCAAGCTTCTGTTCCCATCAACAGTACCTTCAAGTATGTCAATGAAGGCGAATTCGGGCCTTATATCGTTGAGTATGATGGAAACTACCGCACTCTCCCCATCTTTGCTTCACCCTTCCAATTTTGTTTCTATAACACCACCCCAAATGCCTACACCCTGGCTTTAAGAATGGCTACTACCAGGTCTGAGTCACTCTTCCGTTGGGTGTGGGAGGCCAACAGGGGGAAACCAGTCGGCGAGAATGCAACACTGACCTTTGGCACAGATGGAAATCTTGTCTTAGCCCATGCTGATGGCCGAGTCGCCTGGCAGACCGGCACTGCCAACAAGGGCGTGGTGGGGCTCAGACTGCTTCCAACTGGAAACCTGGTGCTTTATGACTCAAAAGGTAAGTTTATTTGGCAGAGTTTTGACTACCCCACTGATACATTGCTAGTGGGTCAGTCCCTTAGGGCAGGGGGTGTGACCAAGCTTGTTAGCCGGGCATCCGAGGCAGACAACTCGGATGGGAAATACAGCTTGGTTATGGAGCCAAAAAGATTGGCTATGTACTATAAGGCTACCAACTCCCCAAAGCCAATTCTCTATGCTACATCTTCAGTGTGGTTTACCATTGATAAGGGTTCTTTAACAAATGTAACCTTAACTTGTTCTCCTGACACTGACGAGGGTTATGCTTATAATCTGATATTAGACTACTATGTCTCCAATTCCCAAAACCCCAGTGGGAACCGCATCTTGGTTAGGCCTAAATACAATAGCACATTAACAATTCTTCGGCTTGGAATCGATGGAAACATTAGGTTATACACGTACTATGACAAGGTGGATTGGCGAGCTTGGGAAGTGACCTACACTCTCTTTGATAGGGATTCGGATGAGGAAACCGAGTGCCAATTGCCGGAGCGGTGCGGGAAGTTTGGGCTATGTGAGGACAACCAGTGTGTGGCTTGCCCATCACCGAAAGGGCTGATGGGGTGGAGCAAGGATTGTGCCCCATTGAAGTTATCTGGTTGTGGGGTGAATGATTTTCACTACTACAAACTTGAAGGGGTTGATCATTTCATGAATAAGTACAGTAATGGAGATGGACCCATGAAGGAGAAGCAATGTTCGGATAAATGTAGCAAGGACTGTAAGTGTCTGGGCTACTTCTACCACACCCTCGAATCAAGATGTTGGATTGCATATGACCTGAACACCCTAACCAAAGTCCAGAATTCAACACATTTGGCTTATATAAAGGCACCCAATAAGTACTGA 1335 0.4629 MSYPSPFILSFVFLFSISISSFIAQASVPINSTFKYVNEGEFGPYIVEYDGNYRTLPIFASPFQFCFYNTTPNAYTLALRMATTRSESLFRWVWEANRGKPVGENATLTFGTDGNLVLAHADGRVAWQTGTANKGVVGLRLLPTGNLVLYDSKGKFIWQSFDYPTDTLLVGQSLRAGGVTKLVSRASEADNSDGKYSLVMEPKRLAMYYKATNSPKPILYATSSVWFTIDKGSLTNVTLTCSPDTDEGYAYNLILDYYVSNSQNPSGNRILVRPKYNSTLTILRLGIDGNIRLYTYYDKVDWRAWEVTYTLFDRDSDEETECQLPERCGKFGLCEDNQCVACPSPKGLMGWSKDCAPLKLSGCGVNDFHYYKLEGVDHFMNKYSNGDGPMKEKQCSDKCSKDCKCLGYFYHTLESRCWIAYDLNTLTKVQNSTHLAYIKAPNKY* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0129 444 PIRSF SLG 1 443 IPR035446 -
Vvi19g0129 444 ProSiteProfiles Bulb-type lectin domain profile. 44 162 IPR001480 -
Vvi19g0129 444 Pfam D-mannose binding lectin 93 181 IPR001480 -
Vvi19g0129 444 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 421 - -
Vvi19g0129 444 SMART blect_4 47 164 IPR001480 -
Vvi19g0129 444 CDD PAN_AP_plant 364 439 - -
Vvi19g0129 444 FunFam Os04g0303100 protein 82 217 - -
Vvi19g0129 444 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 210 IPR036426 -
Vvi19g0129 444 Gene3D - 45 162 IPR036426 -
Vvi19g0129 444 CDD B_lectin 47 164 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0129 Vvi-Chr19 1451177 1452511 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0129 - - vvi:100262364 885.174