Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0128 ATGGCTACTGCTTTTTTCCATATCTTCATCCTCCTCATCCTCTTTCCTTTTGCTGCTCTAGCCCTAGTTCCTGCAAATCAAACCTTCAAATTCGTTAACCAAGGCGAATTTGGAGATCGAATAATCGAATATGATGCTAGCTATCGTGTGATCCGCAATGACGTCTATACTTTCTTCACCTTCCCCTTCCGCCTTTGTTTCTACAACACCACTCCTGATAACTACATTTTCGCCATTAGAGCCGGAGTCCCTGGGGACGAAAGCCTCATGCGGTGGGTTTGGGACGCCAACCGCAACAACCCAGCACACGAAAACTCCACCCTCACCTTTGGCCGTGACGGGAACTTCGTCCTTGCGGAGGCGGACGGCCGAGTGGTGTGGCAGACCAACACGGCAAACAAAGGCGTCACCGGCATTAAGCTTCTCCCGAATGGGAACTTGGTTCTTCACGATAAGAACGGGAAGTTCATCTGGCAGAGCTTTGATTACCCCACTGACACCCTCTTGGTGGGTCAGCTCCTCCGGATCAAAGGCCGGAACAAACTCGTTAGCCGGGTCTCTGAAATGGATGGCTCCGACGGAAAATACAGTTTGGTGTTTGATAAAAAGGGGTTAACCATGTATATAAACAACTCCGGCAAGCTCCTCCAATACGGCGGTTGGCCGGGTGATGATTTTGGAAACATAGTGAGTTTCGAAGCCATACCGGAGAACGATAACGCCACTGCATTTGAGCTAGTGCTGAGCGCATACGAGGAGACAACCCCAACCCCACCACCTCCCGGACGCCGCCGGCTCCTCCAGGTACGTCCAATTAGCAGCGGAGGGCAGCGCAACCTCAACAAACTGAACTACAACGCGACATACTCCTTCTTGAGACTCAGCCATGATGGGAACCTCAGGGCGTATACATACTATGACCAGGTAAGCTACCTGAAATGGGACGAAACCTTTGCATTCTTCTCTAGTTACTTTATCAGAGAATGTGCGTTACCATCAAAATGTGGTTCCTTCGGGCTATGCAATAAGGGCATGTGCGTGGCCTGCCCTAGCCCGAAAGGCCTTCTAGGGTGGAGCGAGAGCTGCGCGCCGCCACGGCTGCCACCATGCAAGGGCGGAGCTGCTAAGGTGGATTACTACAAGATTATTGGAGTGGAGAATTTCTTGAATCCATATTTGGATGATGGGAAAGGTCCCATGAAGGTGGAGGAGTGTAGAGAAAGATGTAGCAGGGACTGCAAGTGTTTAGGGTTTATTTACAAGGAAGATACTTCTAAGTGCCTGCTTGCTCCATTGCTTGCGACTCTTATTAAAGATGAGAATGCTACTTCCGTGGGATATATCAAGTACTCTTAA 1356 0.5007 MATAFFHIFILLILFPFAALALVPANQTFKFVNQGEFGDRIIEYDASYRVIRNDVYTFFTFPFRLCFYNTTPDNYIFAIRAGVPGDESLMRWVWDANRNNPAHENSTLTFGRDGNFVLAEADGRVVWQTNTANKGVTGIKLLPNGNLVLHDKNGKFIWQSFDYPTDTLLVGQLLRIKGRNKLVSRVSEMDGSDGKYSLVFDKKGLTMYINNSGKLLQYGGWPGDDFGNIVSFEAIPENDNATAFELVLSAYEETTPTPPPPGRRRLLQVRPISSGGQRNLNKLNYNATYSFLRLSHDGNLRAYTYYDQVSYLKWDETFAFFSSYFIRECALPSKCGSFGLCNKGMCVACPSPKGLLGWSESCAPPRLPPCKGGAAKVDYYKIIGVENFLNPYLDDGKGPMKVEECRERCSRDCKCLGFIYKEDTSKCLLAPLLATLIKDENATSVGYIKYS* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0128 451 Gene3D - 61 161 IPR036426 -
Vvi19g0128 451 PIRSF SLG 1 451 IPR035446 -
Vvi19g0128 451 Pfam PAN-like domain 400 429 IPR003609 -
Vvi19g0128 451 FunFam Os04g0303100 protein 85 216 - -
Vvi19g0128 451 ProSiteProfiles Bulb-type lectin domain profile. 41 162 IPR001480 -
Vvi19g0128 451 SUPERFAMILY alpha-D-mannose-specific plant lectins 88 214 IPR036426 -
Vvi19g0128 451 CDD B_lectin 59 164 IPR001480 -
Vvi19g0128 451 SMART blect_4 42 164 IPR001480 -
Vvi19g0128 451 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 49 429 - -
Vvi19g0128 451 Pfam D-mannose binding lectin 93 182 IPR001480 -
Vvi19g0128 451 ProSiteProfiles PAN/Apple domain profile. 370 451 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0128 Vvi-Chr19 1441131 1442486 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0128 - - vvi:100264158 897.501