Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0125 ATGGCTGCTTCTCTCCTTCCTCTCCTCCTTTTTTCTCTCTTCTTCCTCCTCAACCCTCCCTCCACCACTGCAAATCTACACAAAGTCAGCAACCTCCTCAGATCACAGCTTCTCTCACAGCCCAAACCCCACCGAGACACCCCTCCAATCAGGTTCTTTGAAGTCACCAAACCCATCAAAGTCCCCAAAACCAAGCCCTGCTCTTCCCTTGTTCTCCAACATGATTTTGGCTACACATATGGTAAACCCCCTGTTCTTGCTCCCTACTCTCCTCCTGCTCATTGCCCATCTCAGAATTTCTCCAAAATTGTGCTGGAATGGAGTGCCACATGTAAAGGGAGGCAATTTGATCGGATTTTTGGGGTTTGGCTTGGTGGGGTTGAGCTTCTCCGGAGCTGCACTGCAGAGCCTACAGCTACTGGGATTGTTTGGACTGTTAAGAAGGATGTTACCAGGTATTATTCTTTGCTTATGAAGGAAGAGACACTTGCTGTTTATTTGGGTAATGTTGTTGATAAAACCTATACTGGGGTTTACCATGTGAATGTGACTTTTCATTTTTATCCTGCTGCGAAGAATTCTGAAAAATTGGCTTCTGGGTATGGTTCCTGGGCGGATTTGATCTTGCCCATTTCGCGAAATCTGCCTTTGAATGATGGGTTGTGGTTTGAAATTGAGAATTCGACTGATTTGGAGGTGAAGAAGTTCAAAATTCCTCGAAATGCCTATAGGGCTGTGTTGGAGGTTTATCTTTCATTTCATGAGAATGATGAATTTTGGTATTCAAATCCACCAAATGATTACATTTCTGCAAATAATCTTACTGGGACTCCTGGAAATGGGCCTTTTAGGGAGGTTTTGGTGGGGCTTGATGGTAAGCTAGTTGGTGCTGTTTGGCCCTTTACAGTCATCTATACAGGAGGGGTCAACCCCCTCTTATGGAGGCCAATTACTGGAATTGGGTCATTTGATCTTCCGAGTTATAATATTGAAATTACTCCATTTTTAGGGAAGATATTAGATGGAAAGACCCATACTTTTGAGTTTAGCGTTACTAATGCCTTGAATGTATGGTACATAGATGCAAATTTGCATATTTGGTTGGACCATAAGAGCACACAAACTGAAGGGAGGCTTTTGGGCCATGGCTCTGGGTCGTCTTTGTCTACTTCGACATTGTATATGAAGGGTTTAAATGCATCATTTTTGACACTCTCTAGCAGGTCTATATCATCCACTGGATGGGTGAAATCCTCCCATGGGAAGATGACAACCCAGTCAATCCAAGAATTCAAATACATCAACTTAATGGTAATGGGGAATGATGGGGATTTGCAGACTGTGAATCAGACAATTCATTTCAATGATGGTGTTTATACCAAGTTCCCATATTCTTTTAGTTATTCGATCAATTCATCTAAACTGTTTCCCCTTTATTTGTACTCTGACAATGTGGATCGAGGAAATGGAACTTATCTTTCACTGGCAAATGTCACTCTGGGATTTAATGAGGAGAGATCTAACTCTGCTGGTTCTAGCTTCTCCAAGACCTTTCTTGAAAATTTGCAGACGGGGCAGGGTTCTATGATTATAAAGAACAACTTGGTGAGCAGTGGATTGGGGAGTACCCAAGAAGTATACAACTATGGCTGTCCTAAATTCTGCTACTTTAGGAATGTGAGCAGCTCAAACTACACCATTTTGTATGATACGGTGAGCAGTTCTTGCAGAAGAAGGCCACAGTCTCAACTGGACATTAGTCATGGTAAATTCTATTCCATTCCTGCTCGAAAGGTCTTTCTAACATCTGATTTGCGTGAAGATGAGAAGGGGAACGGGTGGAAAGAGCACAAAAACGCTGCCGTTTTGACGTCCCTCTTCGCTCCACTTCACACGATGAGCTTGTCTTCTCCGACCAGTATGTGTTGCTGTCTCGGCTGGAGCTCTTCCTCCTCCGTACAACTAGGGTTTCTTCCCGCCAGATTTTTTCGCGTTTCTTCCAGACCAACCAAAAGATTTCATTTCAAATGCTCTTCTTCGGTTCCTGATTCTGATCCACTCTTGGTTAAGGCTGCAAGAGGGGACCCTGTTACTCGGCCTCCAGCATGGATGATGCGCCAAGCCGGAAGGTACATGGCTGTTTACAGAAAGCTTGCAGAGAAATACCCATCCTTCAGACAGAGGTCAGAGACAACTGATCTCATTGTGGAAATTTCTTTGCAGCCTTGGGAAGCTTTCCACCCTGATGGTGTTATCATTTTCTCCGACATACTTACACCTTTACCTGCATTTGGTGTCCCATTTGACATAGAGGAAGTGAGGGGCCCTGTTATTCATTCTCCAATTCGCTCTGAAGAAGGCTTGAAAGTATTGCATCCCATAGACTTAAAGAAGCTTCATTTTGTGGGAGAATCACTAAGAATTTTGCGGCAGGAGGTGGGGGGACAAGCTGCTGTTCTGGGTTTTGTAGGAGCACCTTGGACAATTGGGACATATATAGTGGAAGGCGGTACAACTCGAACATATACGATCATAAAAAGCATGTGTCATACAGCACCAAATGTATTGAGGGCTCTTCTTTCTCATTTAACACAGGCAATATCTGAATACATTGTTTTCCAAGTTGAATCCGGGGCCCATTGTATACAAATATTTGATTCTTGGGGTGGTCAACTACCGCCTGATATGTGGGAGTGCTGGTCAAAACCTTATATTGAAGAGATGGTGAGTGTTGTAAGGAAAAGGTGCCCTGGAACTCCAATTGTTCTCTACATTAATGGAAATGGTGGCCTTCTTGAGCGAATGAAAGGAACTGGGGTCGATGTGATTGGACTTGACTGGACGGTGGATATGGCTGATGGAAGAAAGCGATTGGGGAGTGGAATCAGTATACAGGGAAATGTGGATCCTGCTTATTTATTTTCTCCTCTTCCTGCCTTGACTGATGAAATTCAAAGGGTTGTGAGGTGTGCAGGACCAAGGGGCCACATTCTTAATTTAGGTCACGGCGTTCTTGTTGGGACACCTGAAGAAGCTGTTGCACATTTCTTTGAAGTTGCAAGAAACTTGAACCTTAGTACACTGCTTGAAGACAATGCAGTGGAGGAACCTAAATTGGCTGTTTGA 3126 0.4379 MAASLLPLLLFSLFFLLNPPSTTANLHKVSNLLRSQLLSQPKPHRDTPPIRFFEVTKPIKVPKTKPCSSLVLQHDFGYTYGKPPVLAPYSPPAHCPSQNFSKIVLEWSATCKGRQFDRIFGVWLGGVELLRSCTAEPTATGIVWTVKKDVTRYYSLLMKEETLAVYLGNVVDKTYTGVYHVNVTFHFYPAAKNSEKLASGYGSWADLILPISRNLPLNDGLWFEIENSTDLEVKKFKIPRNAYRAVLEVYLSFHENDEFWYSNPPNDYISANNLTGTPGNGPFREVLVGLDGKLVGAVWPFTVIYTGGVNPLLWRPITGIGSFDLPSYNIEITPFLGKILDGKTHTFEFSVTNALNVWYIDANLHIWLDHKSTQTEGRLLGHGSGSSLSTSTLYMKGLNASFLTLSSRSISSTGWVKSSHGKMTTQSIQEFKYINLMVMGNDGDLQTVNQTIHFNDGVYTKFPYSFSYSINSSKLFPLYLYSDNVDRGNGTYLSLANVTLGFNEERSNSAGSSFSKTFLENLQTGQGSMIIKNNLVSSGLGSTQEVYNYGCPKFCYFRNVSSSNYTILYDTVSSSCRRRPQSQLDISHGKFYSIPARKVFLTSDLREDEKGNGWKEHKNAAVLTSLFAPLHTMSLSSPTSMCCCLGWSSSSSVQLGFLPARFFRVSSRPTKRFHFKCSSSVPDSDPLLVKAARGDPVTRPPAWMMRQAGRYMAVYRKLAEKYPSFRQRSETTDLIVEISLQPWEAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIHSPIRSEEGLKVLHPIDLKKLHFVGESLRILRQEVGGQAAVLGFVGAPWTIGTYIVEGGTTRTYTIIKSMCHTAPNVLRALLSHLTQAISEYIVFQVESGAHCIQIFDSWGGQLPPDMWECWSKPYIEEMVSVVRKRCPGTPIVLYINGNGGLLERMKGTGVDVIGLDWTVDMADGRKRLGSGISIQGNVDPAYLFSPLPALTDEIQRVVRCAGPRGHILNLGHGVLVGTPEEAVAHFFEVARNLNLSTLLEDNAVEEPKLAV* 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0125 1041 Hamap Uroporphyrinogen decarboxylase [hemE]. 684 1024 IPR006361 GO:0004853|GO:0006779
Vvi19g0125 1041 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 701 710 IPR000257 GO:0004853|GO:0006779
Vvi19g0125 1041 Pfam Uroporphyrinogen decarboxylase (URO-D) 687 1022 IPR000257 GO:0004853|GO:0006779
Vvi19g0125 1041 CDD URO-D 690 1022 IPR006361 GO:0004853|GO:0006779
Vvi19g0125 1041 PANTHER PEPTIDE-N4-(N-ACETYL-BETA-GLUCOSAMINYL)ASPARAGINE AMIDASE A PROTEIN 13 586 IPR021102 -
Vvi19g0125 1041 Pfam Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A 62 478 IPR021102 -
Vvi19g0125 1041 NCBIfam uroporphyrinogen decarboxylase 688 1021 IPR006361 GO:0004853|GO:0006779
Vvi19g0125 1041 Gene3D - 678 1024 IPR038071 -
Vvi19g0125 1041 FunFam Uroporphyrinogen decarboxylase 677 1025 - -
Vvi19g0125 1041 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 820 836 IPR000257 GO:0004853|GO:0006779
Vvi19g0125 1041 SUPERFAMILY UROD/MetE-like 687 1024 IPR038071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0125 Vvi-Chr19 1405576 1420485 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0125 - - eus:EUTSA_v10022319mg 1208.74