Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0121 ATGTCGTCGTCTTCTTCATCAAAAGTTGTCGTGGAGTACGCCAAGTCGAATCGGTCTTCGTGCAAGACATGTTCCAAAACGATCTCTGCAAATGCTGTGAGGTTGGGGCTGGTGACCAGAGGCGCGCGAGGCTTCGATATGACCAAGTGGCATCACGTGCATTGCTTTTCGGCTGGTTCCGAGTCGATTTCCTCGGCCGAGATGATACAAGGGTTTGCTTCTTTGAAGAGCAGTGACCAGGAAGCTCTTAAGAAATTGGTTGATGGTTTTGCAAAGTCTCTGGATGAGGTCTTGGATGAAGGTAAAGACCTAACTGAAGGAAGCAAAGAACTGATTTGTGAGGAATTGGGGGTGCATAAAAGAGATGAAGATGAAAAAGATAAGAGGGAAGAAAGGGATTCAAAGAAAACAAAGATGTCTGCACCTGCTCTGAAAGCTGAGCAGGAAATAGCCTTTGCAGTTTCTAATATCAAGGACAAGTATAAGGATGCTACTTTATTGCCAAAATGGAAAGCATTCCAGACAGTAATTTTTCTTGAACGGGATGATGATCTTCATGATTCAAAAAAAATTGCTGCATTCGATTTTGATGGATGTCTTGCCAAAACATCTGTGAAAAGAGTAGGTCCAGATGCTTGGTCCCTTATGTATCCTTCAATACCGGACAAGTTGCAGAGCTTGTATAATGATGGCTACAAGCTGGTAATCTTTACCAATGAATCCAACATAGAGCGCTGGAAGAATAAGAGACAGGTAGCAGTGGACTCAAAAATTGGGCGCCTGAACAATTTCATCAAGTGTGTTAAGGTTCCAATTCAGGTTTTTATATCCTGTGGGTTTGATAAATCTGATGGTCAAGCAGAAGACCCCTTTCGCAAGCCCAAACCTGGGATGTGGCGGATTATGGAGCAACACTTCAACTCTGGCATTTCAATTGATATGGATCAATCCTTTTATGTTGGAGATGCAGCTGGGAGACTAAATGACCACAGTGATGCTGATATTAAATTTGCACAGGCAATTGGACTAAAGTTTTATGTTCCTGAGGAATACTTTGATGCATAA 1065 0.4254 MSSSSSSKVVVEYAKSNRSSCKTCSKTISANAVRLGLVTRGARGFDMTKWHHVHCFSAGSESISSAEMIQGFASLKSSDQEALKKLVDGFAKSLDEVLDEGKDLTEGSKELICEELGVHKRDEDEKDKREERDSKKTKMSAPALKAEQEIAFAVSNIKDKYKDATLLPKWKAFQTVIFLERDDDLHDSKKIAAFDFDGCLAKTSVKRVGPDAWSLMYPSIPDKLQSLYNDGYKLVIFTNESNIERWKNKRQVAVDSKIGRLNNFIKCVKVPIQVFISCGFDKSDGQAEDPFRKPKPGMWRIMEQHFNSGISIDMDQSFYVGDAAGRLNDHSDADIKFAQAIGLKFYVPEEYFDA* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0121 354 Gene3D - 168 354 IPR023214 -
Vvi19g0121 354 CDD HAD_PNP 190 352 - -
Vvi19g0121 354 Gene3D - 2 100 IPR036957 GO:0003677|GO:0008270
Vvi19g0121 354 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 12 87 IPR001510 GO:0003677|GO:0008270
Vvi19g0121 354 Pfam Polynucleotide kinase 3 phosphatase 190 352 IPR013954 -
Vvi19g0121 354 SUPERFAMILY HAD-like 174 352 IPR036412 -
Vvi19g0121 354 SMART zf_PARP_3 12 88 IPR001510 GO:0003677|GO:0008270
Vvi19g0121 354 NCBIfam DNA 3'-phosphatase 178 352 IPR006551 -
Vvi19g0121 354 ProSiteProfiles Zinc finger poly(ADP-ribose) polymerase (PARP)-type profile. 9 91 IPR001510 GO:0003677|GO:0008270
Vvi19g0121 354 FunFam Bifunctional polynucleotide phosphatase/kinase 168 354 - -
Vvi19g0121 354 FunFam Poly [ADP-ribose] polymerase 3 106 - -
Vvi19g0121 354 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 9 91 - -
Vvi19g0121 354 PANTHER BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE 6 353 - -
Vvi19g0121 354 MobiDBLite consensus disorder prediction 122 142 - -
Vvi19g0121 354 NCBIfam HAD-IIIA family hydrolase 190 345 IPR006549 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0121 Vvi-Chr19 1383956 1390224 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0121 K08073 - vvi:100243613 686.797