Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0109 ATGAAGATGAGAGAAGAAGAGATAGAAAAGCTGAGAGGAGTGGTGAGGGATTGCTTGAGCAAGCATCTCTACTCCTCTGCCATATTTTTTGCGGATAAAGTGGCTGCCTTCACTTCCGATCCAGCTGACATCTACATGCAGGCGCAGGCTCTCTTCCTCGGCCGCCACTACCGCCGCGCCTTCCACCTCCTCAACGCCTCCCAGATCGTCCTCCGCGATCTCCGCTTCCGCTACCTCGCCGCCAAATGCCTTGAGGAACAAAAGGAGTGGGATCAATGTCTGTTAATGCTTGGCGATGCTAAAGTGGATGAACATGGAAATGTTAACGACACAAAGGATTGCAATGTCATGTACTTAGATAAAGAAGGGGAAGATCGTGAAATCAATATCTCTTCAGCAATATGCTTTCTACGAGGCAAGGCATATGAAGCTTTGGAAAATCGTGCCCAGGCTCGACTTTGGTATAAAGCTGCTATCAAAGCGGATCCTTTGTGTTATGAGGCTTTGGAATGCCTTATTGAAAATCACATGCTTACGAGTGAGGAAGAAGCAAGTTTACTTTCATCTTTGCAATTTGCTCCTGAAGATGGATGGCTCTCCTCATTCTATTCATGTTTGATAAAGAAGTATGACAAAGAAACTGTGGTAGAAGCCAAATTTACAGAACTTGAAAAACAAAGTTGTAACATTAATCCTTCGGACCCATCCTTCATTTGCACACTGAAAAACAATACAGATCTTCTAGCCTGCAAAGCTGAATACTATCATCAATGCGGCGAATACCAAAAATGTTTTGAACTAACTGCTATATTGCTTGAAAAAGATCCATTCCATATGAAATGTACCTTAGTGCATTTAGCAGCTGCTATGGAGCTTGGACATTCAAATGAACTCTATCTTATGGCATGCAATTTAGTGAAAGATTATCCTCAAAAGGCACTTTCATGGTTTGCTGTTGGTTGCTACTACTATTGTATCAAGAAGTATGACCAGTCACGCCGTTATTTCAGCAAGGCTGCAAATCTAGATGGAACATTTCCTCCTGCTTTGATAGGTTGCGGAAATGCTTATGCTGCTCAAGAAGAGGGTGACCAAGCAATGTTGGCCTATCGAACTGCTGCTCGCTTGTTTCCTGGGTGCCATTTACCCACTCTGTATATTGGGATGGAATACATGCGAACCCATAGCTTTAAGCTCGCTGAGCAGTTTTTCATGCAGGCAAAAACTATTTGCCCCTCAGACCCTCTTGTATATAATGAACTTGGAGTTGTTGCCTATGATATGAAAGAGTACAATAAAGCTGTGTGGTGGTTCCAGAAAACGTTGAGTCACATTCCTTCCTCTTTAAGTGAAATGTGGGAACCGACCATCGTAAATCTGGCTCATGCATATAGAAAGTTAAAGATGTATCATGAAGCAATCTCATTCTATGAGAAAGCCCTCACATTATCGACCAGAAGTTTGAGCACTTATGCTGGCCTTGCATACACTTACCACTTGCAGGATAATTTTCCTGCAGCCATTACATACTACCACAAGGCTTTGTGGCTGAAACCAGATGACCAGTTCTGCACAGAAATGTTGACTCTGGCTCTTGTAGACGAAGCTCGTCGAGGCCTAGACCCAAGAAACGAATCCCGTTAA 1644 0.4331 MKMREEEIEKLRGVVRDCLSKHLYSSAIFFADKVAAFTSDPADIYMQAQALFLGRHYRRAFHLLNASQIVLRDLRFRYLAAKCLEEQKEWDQCLLMLGDAKVDEHGNVNDTKDCNVMYLDKEGEDREINISSAICFLRGKAYEALENRAQARLWYKAAIKADPLCYEALECLIENHMLTSEEEASLLSSLQFAPEDGWLSSFYSCLIKKYDKETVVEAKFTELEKQSCNINPSDPSFICTLKNNTDLLACKAEYYHQCGEYQKCFELTAILLEKDPFHMKCTLVHLAAAMELGHSNELYLMACNLVKDYPQKALSWFAVGCYYYCIKKYDQSRRYFSKAANLDGTFPPALIGCGNAYAAQEEGDQAMLAYRTAARLFPGCHLPTLYIGMEYMRTHSFKLAEQFFMQAKTICPSDPLVYNELGVVAYDMKEYNKAVWWFQKTLSHIPSSLSEMWEPTIVNLAHAYRKLKMYHEAISFYEKALTLSTRSLSTYAGLAYTYHLQDNFPAAITYYHKALWLKPDDQFCTEMLTLALVDEARRGLDPRNESR* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0109 547 Gene3D Tetratricopeptide repeat domain 7 534 IPR011990 GO:0005515
Vvi19g0109 547 Pfam Tetratricopeptide repeat 457 515 - -
Vvi19g0109 547 ProSiteProfiles TPR repeat profile. 313 346 IPR019734 GO:0005515
Vvi19g0109 547 ProSiteProfiles TPR repeat profile. 488 521 IPR019734 GO:0005515
Vvi19g0109 547 Pfam Anaphase-promoting complex, cyclosome, subunit 3 21 99 - -
Vvi19g0109 547 PANTHER CELL DIVISION CYCLE 16,23,27 24 525 - -
Vvi19g0109 547 SUPERFAMILY TPR-like 244 349 IPR011990 GO:0005515
Vvi19g0109 547 ProSiteProfiles TPR repeat profile. 454 487 IPR019734 GO:0005515
Vvi19g0109 547 ProSiteProfiles TPR repeat profile. 415 448 IPR019734 GO:0005515
Vvi19g0109 547 Pfam Tetratricopeptide repeat 134 163 IPR019734 GO:0005515
Vvi19g0109 547 SMART tpr_5 132 165 IPR019734 GO:0005515
Vvi19g0109 547 SMART tpr_5 415 448 IPR019734 GO:0005515
Vvi19g0109 547 SMART tpr_5 454 487 IPR019734 GO:0005515
Vvi19g0109 547 SMART tpr_5 347 380 IPR019734 GO:0005515
Vvi19g0109 547 SMART tpr_5 313 346 IPR019734 GO:0005515
Vvi19g0109 547 SMART tpr_5 381 414 IPR019734 GO:0005515
Vvi19g0109 547 SMART tpr_5 488 521 IPR019734 GO:0005515
Vvi19g0109 547 SMART tpr_5 245 278 IPR019734 GO:0005515
Vvi19g0109 547 SUPERFAMILY TPR-like 41 179 IPR011990 GO:0005515
Vvi19g0109 547 SUPERFAMILY HCP-like 315 522 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0109 292 533 Glycosyltransferase AT3G04240 23.770 7.32e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0109 K03353 - vvi:100267422 1124.38