Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0108 ATGATTCTGGCGCTTTTTAGACATTTTTCATTTTTTTTTCTCAGCTCACTTGTTAAGCAGCCAAACAAAGGGTTTTTTCGGAGGGAAGAGGAAGCATCAGACATGGCTGGCTACAGAGCTGAAGATGACTATGACTACCTCTTCAAGGTTGTCTTGATTGGAGACTCTGGTGTGGGCAAGTCCAACTTGCTCTCTAGGTTCACCAAGAACGAGTTCAATCTCGAGTCCAAGTCCACTATTGGTGTAGAGTTCGCTACCAGGACCTTGAACGTCGATGGCAAGGTCATCAAGGCTCAGATTTGGGACACTGCGGGTCAAGAAAGGTACCGAGCCATCACCAGTGCTTACTACCGAGGAGCTGTAGGTGCACTCCTTGTATACGATGTCACCCGACATGCAACCTTTGAGAATGTTGACAGATGGCTGAAGGAATTGAGGAATCACACTGACCCCAACATCGTTGTGATGCTTGTGGGCAACAAATCCGATCTTCGCCACCTTGTGGCTGTCTCAACAGAAGATGGGAAGACATATGCAGAGAGGGAGTCACTCTACTTCATGGAGACTTCTGCACTGGAAGCGACCAATGTAGAGAATGCATTTGCAGAGGTTCTGACCCAGATATACCGCATTGTGAGCAAGAAGTCGGTGGAAGGAGGAGATGAAGGAGCCGCTTCATCTGTACCTGCCAAAGGGGAGAGAATAAATGTGAAAGATGACGCGTCTGCTCTGAAAAGAGTGGGGTGTTGCTCAGGGTAA 759 0.4809 MILALFRHFSFFFLSSLVKQPNKGFFRREEEASDMAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELRNHTDPNIVVMLVGNKSDLRHLVAVSTEDGKTYAERESLYFMETSALEATNVENAFAEVLTQIYRIVSKKSVEGGDEGAASSVPAKGERINVKDDASALKRVGCCSG* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0108 252 ProSiteProfiles small GTPase Rab1 family profile. 43 250 - -
Vvi19g0108 252 SMART ras_sub_4 45 211 - -
Vvi19g0108 252 NCBIfam small GTP-binding protein domain 46 204 IPR005225 GO:0005525
Vvi19g0108 252 SMART rab_sub_5 48 211 - -
Vvi19g0108 252 PANTHER DRAB11-RELATED 41 237 - -
Vvi19g0108 252 SMART ran_sub_2 53 244 - -
Vvi19g0108 252 CDD Rab11_like 45 209 - -
Vvi19g0108 252 FunFam ras-related protein RABA1f 40 250 - -
Vvi19g0108 252 ProSiteProfiles small GTPase Rho family profile. 41 212 - -
Vvi19g0108 252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 214 IPR027417 -
Vvi19g0108 252 Gene3D - 40 250 IPR027417 -
Vvi19g0108 252 SMART rho_sub_3 50 207 IPR001806 GO:0003924|GO:0005525
Vvi19g0108 252 Pfam Ras family 49 209 IPR001806 GO:0003924|GO:0005525
Vvi19g0108 252 PRINTS Transforming protein P21 ras signature 186 208 - -
Vvi19g0108 252 PRINTS Transforming protein P21 ras signature 89 111 - -
Vvi19g0108 252 PRINTS Transforming protein P21 ras signature 48 69 - -
Vvi19g0108 252 PRINTS Transforming protein P21 ras signature 71 87 - -
Vvi19g0108 252 PRINTS Transforming protein P21 ras signature 151 164 - -
Vvi19g0108 252 ProSiteProfiles small GTPase Ras family profile. 40 244 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0108 Vvi-Chr19 1293523 1301174 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0108 K07904 - vvi:100265921 431.024